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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
utils/initialization
"""
def notebook_init(verbose=True):
# Check system software and hardware
print('Checking setup...')
import os
import shutil
from utils.general import check_requirements, emojis, is_colab
from utils.torch_utils import select_device # imports
check_requirements(('psutil', 'IPython'))
import psutil
from IPython import display # to display images and clear console output
if is_colab():
shutil.rmtree('/content/sample_data', ignore_errors=True) # remove colab /sample_data directory
# System info
if verbose:
gb = 1 << 30 # bytes to GiB (1024 ** 3)
ram = psutil.virtual_memory().total
total, used, free = shutil.disk_usage("/")
display.clear_output()
s = f'({os.cpu_count()} CPUs, {ram / gb:.1f} GB RAM, {(total - free) / gb:.1f}/{total / gb:.1f} GB disk)'
else:
s = ''
select_device(newline=False)
print(emojis(f'Setup complete ✅ {s}'))
return display
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Activation functions
"""
import torch
import torch.nn as nn
import torch.nn.functional as F
class SiLU(nn.Module):
# SiLU activation https://arxiv.org/pdf/1606.08415.pdf
@staticmethod
def forward(x):
return x * torch.sigmoid(x)
class Hardswish(nn.Module):
# Hard-SiLU activation
@staticmethod
def forward(x):
# return x * F.hardsigmoid(x) # for TorchScript and CoreML
return x * F.hardtanh(x + 3, 0.0, 6.0) / 6.0 # for TorchScript, CoreML and ONNX
class Mish(nn.Module):
# Mish activation https://github.com/digantamisra98/Mish
@staticmethod
def forward(x):
return x * F.softplus(x).tanh()
class MemoryEfficientMish(nn.Module):
# Mish activation memory-efficient
class F(torch.autograd.Function):
@staticmethod
def forward(ctx, x):
ctx.save_for_backward(x)
return x.mul(torch.tanh(F.softplus(x))) # x * tanh(ln(1 + exp(x)))
@staticmethod
def backward(ctx, grad_output):
x = ctx.saved_tensors[0]
sx = torch.sigmoid(x)
fx = F.softplus(x).tanh()
return grad_output * (fx + x * sx * (1 - fx * fx))
def forward(self, x):
return self.F.apply(x)
class FReLU(nn.Module):
# FReLU activation https://arxiv.org/abs/2007.11824
def __init__(self, c1, k=3): # ch_in, kernel
super().__init__()
self.conv = nn.Conv2d(c1, c1, k, 1, 1, groups=c1, bias=False)
self.bn = nn.BatchNorm2d(c1)
def forward(self, x):
return torch.max(x, self.bn(self.conv(x)))
class AconC(nn.Module):
r""" ACON activation (activate or not)
AconC: (p1*x-p2*x) * sigmoid(beta*(p1*x-p2*x)) + p2*x, beta is a learnable parameter
according to "Activate or Not: Learning Customized Activation" <https://arxiv.org/pdf/2009.04759.pdf>.
"""
def __init__(self, c1):
super().__init__()
self.p1 = nn.Parameter(torch.randn(1, c1, 1, 1))
self.p2 = nn.Parameter(torch.randn(1, c1, 1, 1))
self.beta = nn.Parameter(torch.ones(1, c1, 1, 1))
def forward(self, x):
dpx = (self.p1 - self.p2) * x
return dpx * torch.sigmoid(self.beta * dpx) + self.p2 * x
class MetaAconC(nn.Module):
r""" ACON activation (activate or not)
MetaAconC: (p1*x-p2*x) * sigmoid(beta*(p1*x-p2*x)) + p2*x, beta is generated by a small network
according to "Activate or Not: Learning Customized Activation" <https://arxiv.org/pdf/2009.04759.pdf>.
"""
def __init__(self, c1, k=1, s=1, r=16): # ch_in, kernel, stride, r
super().__init__()
c2 = max(r, c1 // r)
self.p1 = nn.Parameter(torch.randn(1, c1, 1, 1))
self.p2 = nn.Parameter(torch.randn(1, c1, 1, 1))
self.fc1 = nn.Conv2d(c1, c2, k, s, bias=True)
self.fc2 = nn.Conv2d(c2, c1, k, s, bias=True)
# self.bn1 = nn.BatchNorm2d(c2)
# self.bn2 = nn.BatchNorm2d(c1)
def forward(self, x):
y = x.mean(dim=2, keepdims=True).mean(dim=3, keepdims=True)
# batch-size 1 bug/instabilities https://github.com/ultralytics/yolov5/issues/2891
# beta = torch.sigmoid(self.bn2(self.fc2(self.bn1(self.fc1(y))))) # bug/unstable
beta = torch.sigmoid(self.fc2(self.fc1(y))) # bug patch BN layers removed
dpx = (self.p1 - self.p2) * x
return dpx * torch.sigmoid(beta * dpx) + self.p2 * x
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Image augmentation functions
"""
import math
import random
import cv2
import numpy as np
from utils.general import LOGGER, check_version, colorstr, resample_segments, segment2box
from utils.metrics import bbox_ioa
class Albumentations:
# YOLOv5 Albumentations class (optional, only used if package is installed)
def __init__(self):
self.transform = None
try:
import albumentations as A
check_version(A.__version__, '1.0.3', hard=True) # version requirement
T = [
A.Blur(p=0.01),
A.MedianBlur(p=0.01),
A.ToGray(p=0.01),
A.CLAHE(p=0.01),
A.RandomBrightnessContrast(p=0.0),
A.RandomGamma(p=0.0),
A.ImageCompression(quality_lower=75, p=0.0)] # transforms
self.transform = A.Compose(T, bbox_params=A.BboxParams(format='yolo', label_fields=['class_labels']))
LOGGER.info(colorstr('albumentations: ') + ', '.join(f'{x}' for x in self.transform.transforms if x.p))
except ImportError: # package not installed, skip
pass
except Exception as e:
LOGGER.info(colorstr('albumentations: ') + f'{e}')
def __call__(self, im, labels, p=1.0):
if self.transform and random.random() < p:
new = self.transform(image=im, bboxes=labels[:, 1:], class_labels=labels[:, 0]) # transformed
im, labels = new['image'], np.array([[c, *b] for c, b in zip(new['class_labels'], new['bboxes'])])
return im, labels
def augment_hsv(im, hgain=0.5, sgain=0.5, vgain=0.5):
# HSV color-space augmentation
if hgain or sgain or vgain:
r = np.random.uniform(-1, 1, 3) * [hgain, sgain, vgain] + 1 # random gains
hue, sat, val = cv2.split(cv2.cvtColor(im, cv2.COLOR_BGR2HSV))
dtype = im.dtype # uint8
x = np.arange(0, 256, dtype=r.dtype)
lut_hue = ((x * r[0]) % 180).astype(dtype)
lut_sat = np.clip(x * r[1], 0, 255).astype(dtype)
lut_val = np.clip(x * r[2], 0, 255).astype(dtype)
im_hsv = cv2.merge((cv2.LUT(hue, lut_hue), cv2.LUT(sat, lut_sat), cv2.LUT(val, lut_val)))
cv2.cvtColor(im_hsv, cv2.COLOR_HSV2BGR, dst=im) # no return needed
def hist_equalize(im, clahe=True, bgr=False):
# Equalize histogram on BGR image 'im' with im.shape(n,m,3) and range 0-255
yuv = cv2.cvtColor(im, cv2.COLOR_BGR2YUV if bgr else cv2.COLOR_RGB2YUV)
if clahe:
c = cv2.createCLAHE(clipLimit=2.0, tileGridSize=(8, 8))
yuv[:, :, 0] = c.apply(yuv[:, :, 0])
else:
yuv[:, :, 0] = cv2.equalizeHist(yuv[:, :, 0]) # equalize Y channel histogram
return cv2.cvtColor(yuv, cv2.COLOR_YUV2BGR if bgr else cv2.COLOR_YUV2RGB) # convert YUV image to RGB
def replicate(im, labels):
# Replicate labels
h, w = im.shape[:2]
boxes = labels[:, 1:].astype(int)
x1, y1, x2, y2 = boxes.T
s = ((x2 - x1) + (y2 - y1)) / 2 # side length (pixels)
for i in s.argsort()[:round(s.size * 0.5)]: # smallest indices
x1b, y1b, x2b, y2b = boxes[i]
bh, bw = y2b - y1b, x2b - x1b
yc, xc = int(random.uniform(0, h - bh)), int(random.uniform(0, w - bw)) # offset x, y
x1a, y1a, x2a, y2a = [xc, yc, xc + bw, yc + bh]
im[y1a:y2a, x1a:x2a] = im[y1b:y2b, x1b:x2b] # im4[ymin:ymax, xmin:xmax]
labels = np.append(labels, [[labels[i, 0], x1a, y1a, x2a, y2a]], axis=0)
return im, labels
def letterbox(im, new_shape=(640, 640), color=(114, 114, 114), auto=True, scaleFill=False, scaleup=True, stride=32):
# Resize and pad image while meeting stride-multiple constraints
shape = im.shape[:2] # current shape [height, width]
if isinstance(new_shape, int):
new_shape = (new_shape, new_shape)
# Scale ratio (new / old)
r = min(new_shape[0] / shape[0], new_shape[1] / shape[1])
if not scaleup: # only scale down, do not scale up (for better val mAP)
r = min(r, 1.0)
# Compute padding
ratio = r, r # width, height ratios
new_unpad = int(round(shape[1] * r)), int(round(shape[0] * r))
dw, dh = new_shape[1] - new_unpad[0], new_shape[0] - new_unpad[1] # wh padding
if auto: # minimum rectangle
dw, dh = np.mod(dw, stride), np.mod(dh, stride) # wh padding
elif scaleFill: # stretch
dw, dh = 0.0, 0.0
new_unpad = (new_shape[1], new_shape[0])
ratio = new_shape[1] / shape[1], new_shape[0] / shape[0] # width, height ratios
dw /= 2 # divide padding into 2 sides
dh /= 2
if shape[::-1] != new_unpad: # resize
im = cv2.resize(im, new_unpad, interpolation=cv2.INTER_LINEAR)
top, bottom = int(round(dh - 0.1)), int(round(dh + 0.1))
left, right = int(round(dw - 0.1)), int(round(dw + 0.1))
im = cv2.copyMakeBorder(im, top, bottom, left, right, cv2.BORDER_CONSTANT, value=color) # add border
return im, ratio, (dw, dh)
def random_perspective(im,
targets=(),
segments=(),
degrees=10,
translate=.1,
scale=.1,
shear=10,
perspective=0.0,
border=(0, 0)):
# torchvision.transforms.RandomAffine(degrees=(-10, 10), translate=(0.1, 0.1), scale=(0.9, 1.1), shear=(-10, 10))
# targets = [cls, xyxy]
height = im.shape[0] + border[0] * 2 # shape(h,w,c)
width = im.shape[1] + border[1] * 2
# Center
C = np.eye(3)
C[0, 2] = -im.shape[1] / 2 # x translation (pixels)
C[1, 2] = -im.shape[0] / 2 # y translation (pixels)
# Perspective
P = np.eye(3)
P[2, 0] = random.uniform(-perspective, perspective) # x perspective (about y)
P[2, 1] = random.uniform(-perspective, perspective) # y perspective (about x)
# Rotation and Scale
R = np.eye(3)
a = random.uniform(-degrees, degrees)
# a += random.choice([-180, -90, 0, 90]) # add 90deg rotations to small rotations
s = random.uniform(1 - scale, 1 + scale)
# s = 2 ** random.uniform(-scale, scale)
R[:2] = cv2.getRotationMatrix2D(angle=a, center=(0, 0), scale=s)
# Shear
S = np.eye(3)
S[0, 1] = math.tan(random.uniform(-shear, shear) * math.pi / 180) # x shear (deg)
S[1, 0] = math.tan(random.uniform(-shear, shear) * math.pi / 180) # y shear (deg)
# Translation
T = np.eye(3)
T[0, 2] = random.uniform(0.5 - translate, 0.5 + translate) * width # x translation (pixels)
T[1, 2] = random.uniform(0.5 - translate, 0.5 + translate) * height # y translation (pixels)
# Combined rotation matrix
M = T @ S @ R @ P @ C # order of operations (right to left) is IMPORTANT
if (border[0] != 0) or (border[1] != 0) or (M != np.eye(3)).any(): # image changed
if perspective:
im = cv2.warpPerspective(im, M, dsize=(width, height), borderValue=(114, 114, 114))
else: # affine
im = cv2.warpAffine(im, M[:2], dsize=(width, height), borderValue=(114, 114, 114))
# Visualize
# import matplotlib.pyplot as plt
# ax = plt.subplots(1, 2, figsize=(12, 6))[1].ravel()
# ax[0].imshow(im[:, :, ::-1]) # base
# ax[1].imshow(im2[:, :, ::-1]) # warped
# Transform label coordinates
n = len(targets)
if n:
use_segments = any(x.any() for x in segments)
new = np.zeros((n, 4))
if use_segments: # warp segments
segments = resample_segments(segments) # upsample
for i, segment in enumerate(segments):
xy = np.ones((len(segment), 3))
xy[:, :2] = segment
xy = xy @ M.T # transform
xy = xy[:, :2] / xy[:, 2:3] if perspective else xy[:, :2] # perspective rescale or affine
# clip
new[i] = segment2box(xy, width, height)
else: # warp boxes
xy = np.ones((n * 4, 3))
xy[:, :2] = targets[:, [1, 2, 3, 4, 1, 4, 3, 2]].reshape(n * 4, 2) # x1y1, x2y2, x1y2, x2y1
xy = xy @ M.T # transform
xy = (xy[:, :2] / xy[:, 2:3] if perspective else xy[:, :2]).reshape(n, 8) # perspective rescale or affine
# create new boxes
x = xy[:, [0, 2, 4, 6]]
y = xy[:, [1, 3, 5, 7]]
new = np.concatenate((x.min(1), y.min(1), x.max(1), y.max(1))).reshape(4, n).T
# clip
new[:, [0, 2]] = new[:, [0, 2]].clip(0, width)
new[:, [1, 3]] = new[:, [1, 3]].clip(0, height)
# filter candidates
i = box_candidates(box1=targets[:, 1:5].T * s, box2=new.T, area_thr=0.01 if use_segments else 0.10)
targets = targets[i]
targets[:, 1:5] = new[i]
return im, targets
def copy_paste(im, labels, segments, p=0.5):
# Implement Copy-Paste augmentation https://arxiv.org/abs/2012.07177, labels as nx5 np.array(cls, xyxy)
n = len(segments)
if p and n:
h, w, c = im.shape # height, width, channels
im_new = np.zeros(im.shape, np.uint8)
for j in random.sample(range(n), k=round(p * n)):
l, s = labels[j], segments[j]
box = w - l[3], l[2], w - l[1], l[4]
ioa = bbox_ioa(box, labels[:, 1:5]) # intersection over area
if (ioa < 0.30).all(): # allow 30% obscuration of existing labels
labels = np.concatenate((labels, [[l[0], *box]]), 0)
segments.append(np.concatenate((w - s[:, 0:1], s[:, 1:2]), 1))
cv2.drawContours(im_new, [segments[j].astype(np.int32)], -1, (255, 255, 255), cv2.FILLED)
result = cv2.bitwise_and(src1=im, src2=im_new)
result = cv2.flip(result, 1) # augment segments (flip left-right)
i = result > 0 # pixels to replace
# i[:, :] = result.max(2).reshape(h, w, 1) # act over ch
im[i] = result[i] # cv2.imwrite('debug.jpg', im) # debug
return im, labels, segments
def cutout(im, labels, p=0.5):
# Applies image cutout augmentation https://arxiv.org/abs/1708.04552
if random.random() < p:
h, w = im.shape[:2]
scales = [0.5] * 1 + [0.25] * 2 + [0.125] * 4 + [0.0625] * 8 + [0.03125] * 16 # image size fraction
for s in scales:
mask_h = random.randint(1, int(h * s)) # create random masks
mask_w = random.randint(1, int(w * s))
# box
xmin = max(0, random.randint(0, w) - mask_w // 2)
ymin = max(0, random.randint(0, h) - mask_h // 2)
xmax = min(w, xmin + mask_w)
ymax = min(h, ymin + mask_h)
# apply random color mask
im[ymin:ymax, xmin:xmax] = [random.randint(64, 191) for _ in range(3)]
# return unobscured labels
if len(labels) and s > 0.03:
box = np.array([xmin, ymin, xmax, ymax], dtype=np.float32)
ioa = bbox_ioa(box, labels[:, 1:5]) # intersection over area
labels = labels[ioa < 0.60] # remove >60% obscured labels
return labels
def mixup(im, labels, im2, labels2):
# Applies MixUp augmentation https://arxiv.org/pdf/1710.09412.pdf
r = np.random.beta(32.0, 32.0) # mixup ratio, alpha=beta=32.0
im = (im * r + im2 * (1 - r)).astype(np.uint8)
labels = np.concatenate((labels, labels2), 0)
return im, labels
def box_candidates(box1, box2, wh_thr=2, ar_thr=100, area_thr=0.1, eps=1e-16): # box1(4,n), box2(4,n)
# Compute candidate boxes: box1 before augment, box2 after augment, wh_thr (pixels), aspect_ratio_thr, area_ratio
w1, h1 = box1[2] - box1[0], box1[3] - box1[1]
w2, h2 = box2[2] - box2[0], box2[3] - box2[1]
ar = np.maximum(w2 / (h2 + eps), h2 / (w2 + eps)) # aspect ratio
return (w2 > wh_thr) & (h2 > wh_thr) & (w2 * h2 / (w1 * h1 + eps) > area_thr) & (ar < ar_thr) # candidates
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
AutoAnchor utils
"""
import random
import numpy as np
import torch
import yaml
from tqdm import tqdm
from utils.general import LOGGER, colorstr, emojis
PREFIX = colorstr('AutoAnchor: ')
def check_anchor_order(m):
# Check anchor order against stride order for YOLOv5 Detect() module m, and correct if necessary
a = m.anchors.prod(-1).mean(-1).view(-1) # mean anchor area per output layer
da = a[-1] - a[0] # delta a
ds = m.stride[-1] - m.stride[0] # delta s
if da and (da.sign() != ds.sign()): # same order
LOGGER.info(f'{PREFIX}Reversing anchor order')
m.anchors[:] = m.anchors.flip(0)
def check_anchors(dataset, model, thr=4.0, imgsz=640):
# Check anchor fit to data, recompute if necessary
m = model.module.model[-1] if hasattr(model, 'module') else model.model[-1] # Detect()
shapes = imgsz * dataset.shapes / dataset.shapes.max(1, keepdims=True)
scale = np.random.uniform(0.9, 1.1, size=(shapes.shape[0], 1)) # augment scale
wh = torch.tensor(np.concatenate([l[:, 3:5] * s for s, l in zip(shapes * scale, dataset.labels)])).float() # wh
def metric(k): # compute metric
r = wh[:, None] / k[None]
x = torch.min(r, 1 / r).min(2)[0] # ratio metric
best = x.max(1)[0] # best_x
aat = (x > 1 / thr).float().sum(1).mean() # anchors above threshold
bpr = (best > 1 / thr).float().mean() # best possible recall
return bpr, aat
stride = m.stride.to(m.anchors.device).view(-1, 1, 1) # model strides
anchors = m.anchors.clone() * stride # current anchors
bpr, aat = metric(anchors.cpu().view(-1, 2))
s = f'\n{PREFIX}{aat:.2f} anchors/target, {bpr:.3f} Best Possible Recall (BPR). '
if bpr > 0.98: # threshold to recompute
LOGGER.info(emojis(f'{s}Current anchors are a good fit to dataset ✅'))
else:
LOGGER.info(emojis(f'{s}Anchors are a poor fit to dataset ⚠️, attempting to improve...'))
na = m.anchors.numel() // 2 # number of anchors
try:
anchors = kmean_anchors(dataset, n=na, img_size=imgsz, thr=thr, gen=1000, verbose=False)
except Exception as e:
LOGGER.info(f'{PREFIX}ERROR: {e}')
new_bpr = metric(anchors)[0]
if new_bpr > bpr: # replace anchors
anchors = torch.tensor(anchors, device=m.anchors.device).type_as(m.anchors)
m.anchors[:] = anchors.clone().view_as(m.anchors)
check_anchor_order(m) # must be in pixel-space (not grid-space)
m.anchors /= stride
s = f'{PREFIX}Done ✅ (optional: update model *.yaml to use these anchors in the future)'
else:
s = f'{PREFIX}Done ⚠️ (original anchors better than new anchors, proceeding with original anchors)'
LOGGER.info(emojis(s))
def kmean_anchors(dataset='./data/coco128.yaml', n=9, img_size=640, thr=4.0, gen=1000, verbose=True):
""" Creates kmeans-evolved anchors from training dataset
Arguments:
dataset: path to data.yaml, or a loaded dataset
n: number of anchors
img_size: image size used for training
thr: anchor-label wh ratio threshold hyperparameter hyp['anchor_t'] used for training, default=4.0
gen: generations to evolve anchors using genetic algorithm
verbose: print all results
Return:
k: kmeans evolved anchors
Usage:
from utils.autoanchor import *; _ = kmean_anchors()
"""
from scipy.cluster.vq import kmeans
npr = np.random
thr = 1 / thr
def metric(k, wh): # compute metrics
r = wh[:, None] / k[None]
x = torch.min(r, 1 / r).min(2)[0] # ratio metric
# x = wh_iou(wh, torch.tensor(k)) # iou metric
return x, x.max(1)[0] # x, best_x
def anchor_fitness(k): # mutation fitness
_, best = metric(torch.tensor(k, dtype=torch.float32), wh)
return (best * (best > thr).float()).mean() # fitness
def print_results(k, verbose=True):
k = k[np.argsort(k.prod(1))] # sort small to large
x, best = metric(k, wh0)
bpr, aat = (best > thr).float().mean(), (x > thr).float().mean() * n # best possible recall, anch > thr
s = f'{PREFIX}thr={thr:.2f}: {bpr:.4f} best possible recall, {aat:.2f} anchors past thr\n' \
f'{PREFIX}n={n}, img_size={img_size}, metric_all={x.mean():.3f}/{best.mean():.3f}-mean/best, ' \
f'past_thr={x[x > thr].mean():.3f}-mean: '
for x in k:
s += '%i,%i, ' % (round(x[0]), round(x[1]))
if verbose:
LOGGER.info(s[:-2])
return k
if isinstance(dataset, str): # *.yaml file
with open(dataset, errors='ignore') as f:
data_dict = yaml.safe_load(f) # model dict
from utils.dataloaders import LoadImagesAndLabels
dataset = LoadImagesAndLabels(data_dict['train'], augment=True, rect=True)
# Get label wh
shapes = img_size * dataset.shapes / dataset.shapes.max(1, keepdims=True)
wh0 = np.concatenate([l[:, 3:5] * s for s, l in zip(shapes, dataset.labels)]) # wh
# Filter
i = (wh0 < 3.0).any(1).sum()
if i:
LOGGER.info(f'{PREFIX}WARNING: Extremely small objects found: {i} of {len(wh0)} labels are < 3 pixels in size')
wh = wh0[(wh0 >= 2.0).any(1)] # filter > 2 pixels
# wh = wh * (npr.rand(wh.shape[0], 1) * 0.9 + 0.1) # multiply by random scale 0-1
# Kmeans init
try:
LOGGER.info(f'{PREFIX}Running kmeans for {n} anchors on {len(wh)} points...')
assert n <= len(wh) # apply overdetermined constraint
s = wh.std(0) # sigmas for whitening
k = kmeans(wh / s, n, iter=30)[0] * s # points
assert n == len(k) # kmeans may return fewer points than requested if wh is insufficient or too similar
except Exception:
LOGGER.warning(f'{PREFIX}WARNING: switching strategies from kmeans to random init')
k = np.sort(npr.rand(n * 2)).reshape(n, 2) * img_size # random init
wh, wh0 = (torch.tensor(x, dtype=torch.float32) for x in (wh, wh0))
k = print_results(k, verbose=False)
# Plot
# k, d = [None] * 20, [None] * 20
# for i in tqdm(range(1, 21)):
# k[i-1], d[i-1] = kmeans(wh / s, i) # points, mean distance
# fig, ax = plt.subplots(1, 2, figsize=(14, 7), tight_layout=True)
# ax = ax.ravel()
# ax[0].plot(np.arange(1, 21), np.array(d) ** 2, marker='.')
# fig, ax = plt.subplots(1, 2, figsize=(14, 7)) # plot wh
# ax[0].hist(wh[wh[:, 0]<100, 0],400)
# ax[1].hist(wh[wh[:, 1]<100, 1],400)
# fig.savefig('wh.png', dpi=200)
# Evolve
f, sh, mp, s = anchor_fitness(k), k.shape, 0.9, 0.1 # fitness, generations, mutation prob, sigma
pbar = tqdm(range(gen), bar_format='{l_bar}{bar:10}{r_bar}{bar:-10b}') # progress bar
for _ in pbar:
v = np.ones(sh)
while (v == 1).all(): # mutate until a change occurs (prevent duplicates)
v = ((npr.random(sh) < mp) * random.random() * npr.randn(*sh) * s + 1).clip(0.3, 3.0)
kg = (k.copy() * v).clip(min=2.0)
fg = anchor_fitness(kg)
if fg > f:
f, k = fg, kg.copy()
pbar.desc = f'{PREFIX}Evolving anchors with Genetic Algorithm: fitness = {f:.4f}'
if verbose:
print_results(k, verbose)
return print_results(k)
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Auto-batch utils
"""
from copy import deepcopy
import numpy as np
import torch
from utils.general import LOGGER, colorstr, emojis
from utils.torch_utils import profile
def check_train_batch_size(model, imgsz=640, amp=True):
# Check YOLOv5 training batch size
with torch.cuda.amp.autocast(amp):
return autobatch(deepcopy(model).train(), imgsz) # compute optimal batch size
def autobatch(model, imgsz=640, fraction=0.9, batch_size=16):
# Automatically estimate best batch size to use `fraction` of available CUDA memory
# Usage:
# import torch
# from utils.autobatch import autobatch
# model = torch.hub.load('ultralytics/yolov5', 'yolov5s', autoshape=False)
# print(autobatch(model))
# Check device
prefix = colorstr('AutoBatch: ')
LOGGER.info(f'{prefix}Computing optimal batch size for --imgsz {imgsz}')
device = next(model.parameters()).device # get model device
if device.type == 'cpu':
LOGGER.info(f'{prefix}CUDA not detected, using default CPU batch-size {batch_size}')
return batch_size
# Inspect CUDA memory
gb = 1 << 30 # bytes to GiB (1024 ** 3)
d = str(device).upper() # 'CUDA:0'
properties = torch.cuda.get_device_properties(device) # device properties
t = properties.total_memory / gb # GiB total
r = torch.cuda.memory_reserved(device) / gb # GiB reserved
a = torch.cuda.memory_allocated(device) / gb # GiB allocated
f = t - (r + a) # GiB free
LOGGER.info(f'{prefix}{d} ({properties.name}) {t:.2f}G total, {r:.2f}G reserved, {a:.2f}G allocated, {f:.2f}G free')
# Profile batch sizes
batch_sizes = [1, 2, 4, 8, 16]
try:
img = [torch.zeros(b, 3, imgsz, imgsz) for b in batch_sizes]
results = profile(img, model, n=3, device=device)
except Exception as e:
LOGGER.warning(f'{prefix}{e}')
# Fit a solution
y = [x[2] for x in results if x] # memory [2]
p = np.polyfit(batch_sizes[:len(y)], y, deg=1) # first degree polynomial fit
b = int((f * fraction - p[1]) / p[0]) # y intercept (optimal batch size)
if None in results: # some sizes failed
i = results.index(None) # first fail index
if b >= batch_sizes[i]: # y intercept above failure point
b = batch_sizes[max(i - 1, 0)] # select prior safe point
fraction = np.polyval(p, b) / t # actual fraction predicted
LOGGER.info(emojis(f'{prefix}Using batch-size {b} for {d} {t * fraction:.2f}G/{t:.2f}G ({fraction * 100:.0f}%) ✅'))
return b
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# AWS EC2 instance startup 'MIME' script https://aws.amazon.com/premiumsupport/knowledge-center/execute-user-data-ec2/
# This script will run on every instance restart, not only on first start
# --- DO NOT COPY ABOVE COMMENTS WHEN PASTING INTO USERDATA ---
Content-Type: multipart/mixed; boundary="//"
MIME-Version: 1.0
--//
Content-Type: text/cloud-config; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
Content-Disposition: attachment; filename="cloud-config.txt"
#cloud-config
cloud_final_modules:
- [scripts-user, always]
--//
Content-Type: text/x-shellscript; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
Content-Disposition: attachment; filename="userdata.txt"
#!/bin/bash
# --- paste contents of userdata.sh here ---
--//
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# Resume all interrupted trainings in yolov5/ dir including DDP trainings
# Usage: $ python utils/aws/resume.py
import os
import sys
from pathlib import Path
import torch
import yaml
FILE = Path(__file__).resolve()
ROOT = FILE.parents[2] # YOLOv5 root directory
if str(ROOT) not in sys.path:
sys.path.append(str(ROOT)) # add ROOT to PATH
port = 0 # --master_port
path = Path('').resolve()
for last in path.rglob('*/**/last.pt'):
ckpt = torch.load(last)
if ckpt['optimizer'] is None:
continue
# Load opt.yaml
with open(last.parent.parent / 'opt.yaml', errors='ignore') as f:
opt = yaml.safe_load(f)
# Get device count
d = opt['device'].split(',') # devices
nd = len(d) # number of devices
ddp = nd > 1 or (nd == 0 and torch.cuda.device_count() > 1) # distributed data parallel
if ddp: # multi-GPU
port += 1
cmd = f'python -m torch.distributed.run --nproc_per_node {nd} --master_port {port} train.py --resume {last}'
else: # single-GPU
cmd = f'python train.py --resume {last}'
cmd += ' > /dev/null 2>&1 &' # redirect output to dev/null and run in daemon thread
print(cmd)
os.system(cmd)
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#!/bin/bash
# AWS EC2 instance startup script https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/user-data.html
# This script will run only once on first instance start (for a re-start script see mime.sh)
# /home/ubuntu (ubuntu) or /home/ec2-user (amazon-linux) is working dir
# Use >300 GB SSD
cd home/ubuntu
if [ ! -d yolov5 ]; then
echo "Running first-time script." # install dependencies, download COCO, pull Docker
git clone https://github.com/ultralytics/yolov5 -b master && sudo chmod -R 777 yolov5
cd yolov5
bash data/scripts/get_coco.sh && echo "COCO done." &
sudo docker pull ultralytics/yolov5:latest && echo "Docker done." &
python -m pip install --upgrade pip && pip install -r requirements.txt && python detect.py && echo "Requirements done." &
wait && echo "All tasks done." # finish background tasks
else
echo "Running re-start script." # resume interrupted runs
i=0
list=$(sudo docker ps -qa) # container list i.e. $'one\ntwo\nthree\nfour'
while IFS= read -r id; do
((i++))
echo "restarting container $i: $id"
sudo docker start $id
# sudo docker exec -it $id python train.py --resume # single-GPU
sudo docker exec -d $id python utils/aws/resume.py # multi-scenario
done <<<"$list"
fi
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Run YOLOv5 benchmarks on all supported export formats
Format | `export.py --include` | Model
--- | --- | ---
PyTorch | - | yolov5s.pt
TorchScript | `torchscript` | yolov5s.torchscript
ONNX | `onnx` | yolov5s.onnx
OpenVINO | `openvino` | yolov5s_openvino_model/
TensorRT | `engine` | yolov5s.engine
CoreML | `coreml` | yolov5s.mlmodel
TensorFlow SavedModel | `saved_model` | yolov5s_saved_model/
TensorFlow GraphDef | `pb` | yolov5s.pb
TensorFlow Lite | `tflite` | yolov5s.tflite
TensorFlow Edge TPU | `edgetpu` | yolov5s_edgetpu.tflite
TensorFlow.js | `tfjs` | yolov5s_web_model/
Requirements:
$ pip install -r requirements.txt coremltools onnx onnx-simplifier onnxruntime openvino-dev tensorflow-cpu # CPU
$ pip install -r requirements.txt coremltools onnx onnx-simplifier onnxruntime-gpu openvino-dev tensorflow # GPU
$ pip install -U nvidia-tensorrt --index-url https://pypi.ngc.nvidia.com # TensorRT
Usage:
$ python utils/benchmarks.py --weights yolov5s.pt --img 640
"""
import argparse
import sys
import time
from pathlib import Path
import pandas as pd
FILE = Path(__file__).resolve()
ROOT = FILE.parents[1] # YOLOv5 root directory
if str(ROOT) not in sys.path:
sys.path.append(str(ROOT)) # add ROOT to PATH
# ROOT = ROOT.relative_to(Path.cwd()) # relative
import export
import val
from utils import notebook_init
from utils.general import LOGGER, check_yaml, print_args
from utils.torch_utils import select_device
def run(
weights=ROOT / 'yolov5s.pt', # weights path
imgsz=640, # inference size (pixels)
batch_size=1, # batch size
data=ROOT / 'data/coco128.yaml', # dataset.yaml path
device='', # cuda device, i.e. 0 or 0,1,2,3 or cpu
half=False, # use FP16 half-precision inference
test=False, # test exports only
pt_only=False, # test PyTorch only
):
y, t = [], time.time()
device = select_device(device)
for i, (name, f, suffix, gpu) in export.export_formats().iterrows(): # index, (name, file, suffix, gpu-capable)
try:
assert i != 9, 'Edge TPU not supported'
assert i != 10, 'TF.js not supported'
if device.type != 'cpu':
assert gpu, f'{name} inference not supported on GPU'
# Export
if f == '-':
w = weights # PyTorch format
else:
w = export.run(weights=weights, imgsz=[imgsz], include=[f], device=device, half=half)[-1] # all others
assert suffix in str(w), 'export failed'
# Validate
result = val.run(data, w, batch_size, imgsz, plots=False, device=device, task='benchmark', half=half)
metrics = result[0] # metrics (mp, mr, map50, map, *losses(box, obj, cls))
speeds = result[2] # times (preprocess, inference, postprocess)
y.append([name, round(metrics[3], 4), round(speeds[1], 2)]) # mAP, t_inference
except Exception as e:
LOGGER.warning(f'WARNING: Benchmark failure for {name}: {e}')
y.append([name, None, None]) # mAP, t_inference
if pt_only and i == 0:
break # break after PyTorch
# Print results
LOGGER.info('\n')
parse_opt()
notebook_init() # print system info
py = pd.DataFrame(y, columns=['Format', 'mAP@0.5:0.95', 'Inference time (ms)'] if map else ['Format', 'Export', ''])
LOGGER.info(f'\nBenchmarks complete ({time.time() - t:.2f}s)')
LOGGER.info(str(py if map else py.iloc[:, :2]))
return py
def test(
weights=ROOT / 'yolov5s.pt', # weights path
imgsz=640, # inference size (pixels)
batch_size=1, # batch size
data=ROOT / 'data/coco128.yaml', # dataset.yaml path
device='', # cuda device, i.e. 0 or 0,1,2,3 or cpu
half=False, # use FP16 half-precision inference
test=False, # test exports only
pt_only=False, # test PyTorch only
):
y, t = [], time.time()
device = select_device(device)
for i, (name, f, suffix, gpu) in export.export_formats().iterrows(): # index, (name, file, suffix, gpu-capable)
try:
w = weights if f == '-' else \
export.run(weights=weights, imgsz=[imgsz], include=[f], device=device, half=half)[-1] # weights
assert suffix in str(w), 'export failed'
y.append([name, True])
except Exception:
y.append([name, False]) # mAP, t_inference
# Print results
LOGGER.info('\n')
parse_opt()
notebook_init() # print system info
py = pd.DataFrame(y, columns=['Format', 'Export'])
LOGGER.info(f'\nExports complete ({time.time() - t:.2f}s)')
LOGGER.info(str(py))
return py
def parse_opt():
parser = argparse.ArgumentParser()
parser.add_argument('--weights', type=str, default=ROOT / 'yolov5s.pt', help='weights path')
parser.add_argument('--imgsz', '--img', '--img-size', type=int, default=640, help='inference size (pixels)')
parser.add_argument('--batch-size', type=int, default=1, help='batch size')
parser.add_argument('--data', type=str, default=ROOT / 'data/coco128.yaml', help='dataset.yaml path')
parser.add_argument('--device', default='', help='cuda device, i.e. 0 or 0,1,2,3 or cpu')
parser.add_argument('--half', action='store_true', help='use FP16 half-precision inference')
parser.add_argument('--test', action='store_true', help='test exports only')
parser.add_argument('--pt-only', action='store_true', help='test PyTorch only')
opt = parser.parse_args()
opt.data = check_yaml(opt.data) # check YAML
print_args(vars(opt))
return opt
def main(opt):
test(**vars(opt)) if opt.test else run(**vars(opt))
if __name__ == "__main__":
opt = parse_opt()
main(opt)
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Callback utils
"""
class Callbacks:
""""
Handles all registered callbacks for YOLOv5 Hooks
"""
def __init__(self):
# Define the available callbacks
self._callbacks = {
'on_pretrain_routine_start': [],
'on_pretrain_routine_end': [],
'on_train_start': [],
'on_train_epoch_start': [],
'on_train_batch_start': [],
'optimizer_step': [],
'on_before_zero_grad': [],
'on_train_batch_end': [],
'on_train_epoch_end': [],
'on_val_start': [],
'on_val_batch_start': [],
'on_val_image_end': [],
'on_val_batch_end': [],
'on_val_end': [],
'on_fit_epoch_end': [], # fit = train + val
'on_model_save': [],
'on_train_end': [],
'on_params_update': [],
'teardown': [],}
self.stop_training = False # set True to interrupt training
def register_action(self, hook, name='', callback=None):
"""
Register a new action to a callback hook
Args:
hook: The callback hook name to register the action to
name: The name of the action for later reference
callback: The callback to fire
"""
assert hook in self._callbacks, f"hook '{hook}' not found in callbacks {self._callbacks}"
assert callable(callback), f"callback '{callback}' is not callable"
self._callbacks[hook].append({'name': name, 'callback': callback})
def get_registered_actions(self, hook=None):
""""
Returns all the registered actions by callback hook
Args:
hook: The name of the hook to check, defaults to all
"""
return self._callbacks[hook] if hook else self._callbacks
def run(self, hook, *args, **kwargs):
"""
Loop through the registered actions and fire all callbacks
Args:
hook: The name of the hook to check, defaults to all
args: Arguments to receive from YOLOv5
kwargs: Keyword Arguments to receive from YOLOv5
"""
assert hook in self._callbacks, f"hook '{hook}' not found in callbacks {self._callbacks}"
for logger in self._callbacks[hook]:
logger['callback'](*args, **kwargs)
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# Repo-specific DockerIgnore -------------------------------------------------------------------------------------------
#.git
.cache
.idea
runs
output
coco
storage.googleapis.com
data/samples/*
**/results*.csv
*.jpg
# Neural Network weights -----------------------------------------------------------------------------------------------
**/*.pt
**/*.pth
**/*.onnx
**/*.engine
**/*.mlmodel
**/*.torchscript
**/*.torchscript.pt
**/*.tflite
**/*.h5
**/*.pb
*_saved_model/
*_web_model/
*_openvino_model/
# Below Copied From .gitignore -----------------------------------------------------------------------------------------
# Below Copied From .gitignore -----------------------------------------------------------------------------------------
# GitHub Python GitIgnore ----------------------------------------------------------------------------------------------
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
wandb/
.installed.cfg
*.egg
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
# Translations
*.mo
*.pot
# Django stuff:
*.log
local_settings.py
# Flask stuff:
instance/
.webassets-cache
# Scrapy stuff:
.scrapy
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# Jupyter Notebook
.ipynb_checkpoints
# pyenv
.python-version
# celery beat schedule file
celerybeat-schedule
# SageMath parsed files
*.sage.py
# dotenv
.env
# virtualenv
.venv*
venv*/
ENV*/
# Spyder project settings
.spyderproject
.spyproject
# Rope project settings
.ropeproject
# mkdocs documentation
/site
# mypy
.mypy_cache/
# https://github.com/github/gitignore/blob/master/Global/macOS.gitignore -----------------------------------------------
# General
.DS_Store
.AppleDouble
.LSOverride
# Icon must end with two \r
Icon
Icon?
# Thumbnails
._*
# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk
# https://github.com/github/gitignore/blob/master/Global/JetBrains.gitignore
# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and WebStorm
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
# User-specific stuff:
.idea/*
.idea/**/workspace.xml
.idea/**/tasks.xml
.idea/dictionaries
.html # Bokeh Plots
.pg # TensorFlow Frozen Graphs
.avi # videos
# Sensitive or high-churn files:
.idea/**/dataSources/
.idea/**/dataSources.ids
.idea/**/dataSources.local.xml
.idea/**/sqlDataSources.xml
.idea/**/dynamic.xml
.idea/**/uiDesigner.xml
# Gradle:
.idea/**/gradle.xml
.idea/**/libraries
# CMake
cmake-build-debug/
cmake-build-release/
# Mongo Explorer plugin:
.idea/**/mongoSettings.xml
## File-based project format:
*.iws
## Plugin-specific files:
# IntelliJ
out/
# mpeltonen/sbt-idea plugin
.idea_modules/
# JIRA plugin
atlassian-ide-plugin.xml
# Cursive Clojure plugin
.idea/replstate.xml
# Crashlytics plugin (for Android Studio and IntelliJ)
com_crashlytics_export_strings.xml
crashlytics.properties
crashlytics-build.properties
fabric.properties
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
# Builds ultralytics/yolov5:latest image on DockerHub https://hub.docker.com/r/ultralytics/yolov5
# Image is CUDA-optimized for YOLOv5 single/multi-GPU training and inference
# Start FROM NVIDIA PyTorch image https://ngc.nvidia.com/catalog/containers/nvidia:pytorch
FROM nvcr.io/nvidia/pytorch:22.05-py3
RUN rm -rf /opt/pytorch # remove 1.2GB dir
# Downloads to user config dir
ADD https://ultralytics.com/assets/Arial.ttf https://ultralytics.com/assets/Arial.Unicode.ttf /root/.config/Ultralytics/
# Install linux packages
RUN apt update && apt install --no-install-recommends -y zip htop screen libgl1-mesa-glx
# Install pip packages
COPY requirements.txt .
RUN python -m pip install --upgrade pip
RUN pip uninstall -y torch torchvision torchtext Pillow
RUN pip install --no-cache -r requirements.txt albumentations wandb gsutil notebook Pillow>=9.1.0 \
'opencv-python<4.6.0.66' \
--extra-index-url https://download.pytorch.org/whl/cu113
# Create working directory
RUN mkdir -p /usr/src/app
WORKDIR /usr/src/app
# Copy contents
COPY . /usr/src/app
RUN git clone https://github.com/ultralytics/yolov5 /usr/src/yolov5
# Set environment variables
ENV OMP_NUM_THREADS=8
# Usage Examples -------------------------------------------------------------------------------------------------------
# Build and Push
# t=ultralytics/yolov5:latest && sudo docker build -f utils/docker/Dockerfile -t $t . && sudo docker push $t
# Pull and Run
# t=ultralytics/yolov5:latest && sudo docker pull $t && sudo docker run -it --ipc=host --gpus all $t
# Pull and Run with local directory access
# t=ultralytics/yolov5:latest && sudo docker pull $t && sudo docker run -it --ipc=host --gpus all -v "$(pwd)"/datasets:/usr/src/datasets $t
# Kill all
# sudo docker kill $(sudo docker ps -q)
# Kill all image-based
# sudo docker kill $(sudo docker ps -qa --filter ancestor=ultralytics/yolov5:latest)
# Bash into running container
# sudo docker exec -it 5a9b5863d93d bash
# Bash into stopped container
# id=$(sudo docker ps -qa) && sudo docker start $id && sudo docker exec -it $id bash
# Clean up
# docker system prune -a --volumes
# Update Ubuntu drivers
# https://www.maketecheasier.com/install-nvidia-drivers-ubuntu/
# DDP test
# python -m torch.distributed.run --nproc_per_node 2 --master_port 1 train.py --epochs 3
# GCP VM from Image
# docker.io/ultralytics/yolov5:latest
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
# Builds ultralytics/yolov5:latest-arm64 image on DockerHub https://hub.docker.com/r/ultralytics/yolov5
# Image is aarch64-compatible for Apple M1 and other ARM architectures i.e. Jetson Nano and Raspberry Pi
# Start FROM Ubuntu image https://hub.docker.com/_/ubuntu
FROM arm64v8/ubuntu:20.04
# Downloads to user config dir
ADD https://ultralytics.com/assets/Arial.ttf https://ultralytics.com/assets/Arial.Unicode.ttf /root/.config/Ultralytics/
# Install linux packages
RUN apt update
RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt install -y tzdata
RUN apt install --no-install-recommends -y python3-pip git zip curl htop gcc \
libgl1-mesa-glx libglib2.0-0 libpython3.8-dev
# RUN alias python=python3
# Install pip packages
COPY requirements.txt .
RUN python3 -m pip install --upgrade pip
RUN pip install --no-cache -r requirements.txt gsutil notebook \
tensorflow-aarch64
# tensorflowjs \
# onnx onnx-simplifier onnxruntime \
# coremltools openvino-dev \
# Create working directory
RUN mkdir -p /usr/src/app
WORKDIR /usr/src/app
# Copy contents
COPY . /usr/src/app
RUN git clone https://github.com/ultralytics/yolov5 /usr/src/yolov5
# Usage Examples -------------------------------------------------------------------------------------------------------
# Build and Push
# t=ultralytics/yolov5:latest-M1 && sudo docker build --platform linux/arm64 -f utils/docker/Dockerfile-arm64 -t $t . && sudo docker push $t
# Pull and Run
# t=ultralytics/yolov5:latest-M1 && sudo docker pull $t && sudo docker run -it --ipc=host -v "$(pwd)"/datasets:/usr/src/datasets $t
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
# Builds ultralytics/yolov5:latest-cpu image on DockerHub https://hub.docker.com/r/ultralytics/yolov5
# Image is CPU-optimized for ONNX, OpenVINO and PyTorch YOLOv5 deployments
# Start FROM Ubuntu image https://hub.docker.com/_/ubuntu
FROM ubuntu:20.04
# Downloads to user config dir
ADD https://ultralytics.com/assets/Arial.ttf https://ultralytics.com/assets/Arial.Unicode.ttf /root/.config/Ultralytics/
# Install linux packages
RUN apt update
RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt install -y tzdata
RUN apt install --no-install-recommends -y python3-pip git zip curl htop libgl1-mesa-glx libglib2.0-0 libpython3.8-dev
# RUN alias python=python3
# Install pip packages
COPY requirements.txt .
RUN python3 -m pip install --upgrade pip
RUN pip install --no-cache -r requirements.txt albumentations gsutil notebook \
coremltools onnx onnx-simplifier onnxruntime openvino-dev tensorflow-cpu tensorflowjs \
--extra-index-url https://download.pytorch.org/whl/cpu
# Create working directory
RUN mkdir -p /usr/src/app
WORKDIR /usr/src/app
# Copy contents
COPY . /usr/src/app
RUN git clone https://github.com/ultralytics/yolov5 /usr/src/yolov5
# Usage Examples -------------------------------------------------------------------------------------------------------
# Build and Push
# t=ultralytics/yolov5:latest-cpu && sudo docker build -f utils/docker/Dockerfile-cpu -t $t . && sudo docker push $t
# Pull and Run
# t=ultralytics/yolov5:latest-cpu && sudo docker pull $t && sudo docker run -it --ipc=host -v "$(pwd)"/datasets:/usr/src/datasets $t
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Download utils
"""
import logging
import os
import platform
import subprocess
import time
import urllib
from pathlib import Path
from zipfile import ZipFile
import requests
import torch
def is_url(url):
# Check if online file exists
try:
r = urllib.request.urlopen(url) # response
return r.getcode() == 200
except urllib.request.HTTPError:
return False
def gsutil_getsize(url=''):
# gs://bucket/file size https://cloud.google.com/storage/docs/gsutil/commands/du
s = subprocess.check_output(f'gsutil du {url}', shell=True).decode('utf-8')
return eval(s.split(' ')[0]) if len(s) else 0 # bytes
def safe_download(file, url, url2=None, min_bytes=1E0, error_msg=''):
# Attempts to download file from url or url2, checks and removes incomplete downloads < min_bytes
from utils.general import LOGGER
file = Path(file)
assert_msg = f"Downloaded file '{file}' does not exist or size is < min_bytes={min_bytes}"
try: # url1
LOGGER.info(f'Downloading {url} to {file}...')
torch.hub.download_url_to_file(url, str(file), progress=LOGGER.level <= logging.INFO)
assert file.exists() and file.stat().st_size > min_bytes, assert_msg # check
except Exception as e: # url2
file.unlink(missing_ok=True) # remove partial downloads
LOGGER.info(f'ERROR: {e}\nRe-attempting {url2 or url} to {file}...')
os.system(f"curl -L '{url2 or url}' -o '{file}' --retry 3 -C -") # curl download, retry and resume on fail
finally:
if not file.exists() or file.stat().st_size < min_bytes: # check
file.unlink(missing_ok=True) # remove partial downloads
LOGGER.info(f"ERROR: {assert_msg}\n{error_msg}")
LOGGER.info('')
def attempt_download(file, repo='ultralytics/yolov5', release='v6.1'):
# Attempt file download from GitHub release assets if not found locally. release = 'latest', 'v6.1', etc.
from utils.general import LOGGER
def github_assets(repository, version='latest'):
# Return GitHub repo tag (i.e. 'v6.1') and assets (i.e. ['yolov5s.pt', 'yolov5m.pt', ...])
if version != 'latest':
version = f'tags/{version}' # i.e. tags/v6.1
response = requests.get(f'https://api.github.com/repos/{repository}/releases/{version}').json() # github api
return response['tag_name'], [x['name'] for x in response['assets']] # tag, assets
file = Path(str(file).strip().replace("'", ''))
if not file.exists():
# URL specified
name = Path(urllib.parse.unquote(str(file))).name # decode '%2F' to '/' etc.
if str(file).startswith(('http:/', 'https:/')): # download
url = str(file).replace(':/', '://') # Pathlib turns :// -> :/
file = name.split('?')[0] # parse authentication https://url.com/file.txt?auth...
if Path(file).is_file():
LOGGER.info(f'Found {url} locally at {file}') # file already exists
else:
safe_download(file=file, url=url, min_bytes=1E5)
return file
# GitHub assets
assets = [
'yolov5n.pt', 'yolov5s.pt', 'yolov5m.pt', 'yolov5l.pt', 'yolov5x.pt', 'yolov5n6.pt', 'yolov5s6.pt',
'yolov5m6.pt', 'yolov5l6.pt', 'yolov5x6.pt']
try:
tag, assets = github_assets(repo, release)
except Exception:
try:
tag, assets = github_assets(repo) # latest release
except Exception:
try:
tag = subprocess.check_output('git tag', shell=True, stderr=subprocess.STDOUT).decode().split()[-1]
except Exception:
tag = release
file.parent.mkdir(parents=True, exist_ok=True) # make parent dir (if required)
if name in assets:
url3 = 'https://drive.google.com/drive/folders/1EFQTEUeXWSFww0luse2jB9M1QNZQGwNl' # backup gdrive mirror
safe_download(
file,
url=f'https://github.com/{repo}/releases/download/{tag}/{name}',
url2=f'https://storage.googleapis.com/{repo}/{tag}/{name}', # backup url (optional)
min_bytes=1E5,
error_msg=f'{file} missing, try downloading from https://github.com/{repo}/releases/{tag} or {url3}')
return str(file)
def gdrive_download(id='16TiPfZj7htmTyhntwcZyEEAejOUxuT6m', file='tmp.zip'):
# Downloads a file from Google Drive. from yolov5.utils.downloads import *; gdrive_download()
t = time.time()
file = Path(file)
cookie = Path('cookie') # gdrive cookie
print(f'Downloading https://drive.google.com/uc?export=download&id={id} as {file}... ', end='')
file.unlink(missing_ok=True) # remove existing file
cookie.unlink(missing_ok=True) # remove existing cookie
# Attempt file download
out = "NUL" if platform.system() == "Windows" else "/dev/null"
os.system(f'curl -c ./cookie -s -L "drive.google.com/uc?export=download&id={id}" > {out}')
if os.path.exists('cookie'): # large file
s = f'curl -Lb ./cookie "drive.google.com/uc?export=download&confirm={get_token()}&id={id}" -o {file}'
else: # small file
s = f'curl -s -L -o {file} "drive.google.com/uc?export=download&id={id}"'
r = os.system(s) # execute, capture return
cookie.unlink(missing_ok=True) # remove existing cookie
# Error check
if r != 0:
file.unlink(missing_ok=True) # remove partial
print('Download error ') # raise Exception('Download error')
return r
# Unzip if archive
if file.suffix == '.zip':
print('unzipping... ', end='')
ZipFile(file).extractall(path=file.parent) # unzip
file.unlink() # remove zip
print(f'Done ({time.time() - t:.1f}s)')
return r
def get_token(cookie="./cookie"):
with open(cookie) as f:
for line in f:
if "download" in line:
return line.split()[-1]
return ""
# Google utils: https://cloud.google.com/storage/docs/reference/libraries ----------------------------------------------
#
#
# def upload_blob(bucket_name, source_file_name, destination_blob_name):
# # Uploads a file to a bucket
# # https://cloud.google.com/storage/docs/uploading-objects#storage-upload-object-python
#
# storage_client = storage.Client()
# bucket = storage_client.get_bucket(bucket_name)
# blob = bucket.blob(destination_blob_name)
#
# blob.upload_from_filename(source_file_name)
#
# print('File {} uploaded to {}.'.format(
# source_file_name,
# destination_blob_name))
#
#
# def download_blob(bucket_name, source_blob_name, destination_file_name):
# # Uploads a blob from a bucket
# storage_client = storage.Client()
# bucket = storage_client.get_bucket(bucket_name)
# blob = bucket.blob(source_blob_name)
#
# blob.download_to_filename(destination_file_name)
#
# print('Blob {} downloaded to {}.'.format(
# source_blob_name,
# destination_file_name))
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# Flask REST API
[REST](https://en.wikipedia.org/wiki/Representational_state_transfer) [API](https://en.wikipedia.org/wiki/API)s are
commonly used to expose Machine Learning (ML) models to other services. This folder contains an example REST API
created using Flask to expose the YOLOv5s model from [PyTorch Hub](https://pytorch.org/hub/ultralytics_yolov5/).
## Requirements
[Flask](https://palletsprojects.com/p/flask/) is required. Install with:
```shell
$ pip install Flask
```
## Run
After Flask installation run:
```shell
$ python3 restapi.py --port 5000
```
Then use [curl](https://curl.se/) to perform a request:
```shell
$ curl -X POST -F image=@zidane.jpg 'http://localhost:5000/v1/object-detection/yolov5s'
```
The model inference results are returned as a JSON response:
```json
[
{
"class": 0,
"confidence": 0.8900438547,
"height": 0.9318675399,
"name": "person",
"width": 0.3264600933,
"xcenter": 0.7438579798,
"ycenter": 0.5207948685
},
{
"class": 0,
"confidence": 0.8440024257,
"height": 0.7155083418,
"name": "person",
"width": 0.6546785235,
"xcenter": 0.427829951,
"ycenter": 0.6334488392
},
{
"class": 27,
"confidence": 0.3771208823,
"height": 0.3902671337,
"name": "tie",
"width": 0.0696444362,
"xcenter": 0.3675483763,
"ycenter": 0.7991207838
},
{
"class": 27,
"confidence": 0.3527112305,
"height": 0.1540903747,
"name": "tie",
"width": 0.0336618312,
"xcenter": 0.7814827561,
"ycenter": 0.5065554976
}
]
```
An example python script to perform inference using [requests](https://docs.python-requests.org/en/master/) is given
in `example_request.py`
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Perform test request
"""
import pprint
import requests
DETECTION_URL = "http://localhost:5000/v1/object-detection/yolov5s"
IMAGE = "zidane.jpg"
# Read image
with open(IMAGE, "rb") as f:
image_data = f.read()
response = requests.post(DETECTION_URL, files={"image": image_data}).json()
pprint.pprint(response)
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Run a Flask REST API exposing a YOLOv5s model
"""
import argparse
import io
import torch
from flask import Flask, request
from PIL import Image
app = Flask(__name__)
DETECTION_URL = "/v1/object-detection/yolov5s"
@app.route(DETECTION_URL, methods=["POST"])
def predict():
if request.method != "POST":
return
if request.files.get("image"):
# Method 1
# with request.files["image"] as f:
# im = Image.open(io.BytesIO(f.read()))
# Method 2
im_file = request.files["image"]
im_bytes = im_file.read()
im = Image.open(io.BytesIO(im_bytes))
results = model(im, size=640) # reduce size=320 for faster inference
return results.pandas().xyxy[0].to_json(orient="records")
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Flask API exposing YOLOv5 model")
parser.add_argument("--port", default=5000, type=int, help="port number")
opt = parser.parse_args()
# Fix known issue urllib.error.HTTPError 403: rate limit exceeded https://github.com/ultralytics/yolov5/pull/7210
torch.hub._validate_not_a_forked_repo = lambda a, b, c: True
model = torch.hub.load("ultralytics/yolov5", "yolov5s", force_reload=True) # force_reload to recache
app.run(host="0.0.0.0", port=opt.port) # debug=True causes Restarting with stat
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FROM gcr.io/google-appengine/python
# Create a virtualenv for dependencies. This isolates these packages from
# system-level packages.
# Use -p python3 or -p python3.7 to select python version. Default is version 2.
RUN virtualenv /env -p python3
# Setting these environment variables are the same as running
# source /env/bin/activate.
ENV VIRTUAL_ENV /env
ENV PATH /env/bin:$PATH
RUN apt-get update && apt-get install -y python-opencv
# Copy the application's requirements.txt and run pip to install all
# dependencies into the virtualenv.
ADD requirements.txt /app/requirements.txt
RUN pip install -r /app/requirements.txt
# Add the application source code.
ADD . /app
# Run a WSGI server to serve the application. gunicorn must be declared as
# a dependency in requirements.txt.
CMD gunicorn -b :$PORT main:app
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# add these requirements in your app on top of the existing ones
pip==21.1
Flask==1.0.2
gunicorn==19.9.0
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runtime: custom
env: flex
service: yolov5app
liveness_check:
initial_delay_sec: 600
manual_scaling:
instances: 1
resources:
cpu: 1
memory_gb: 4
disk_size_gb: 20
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Logging utils
"""
import os
import warnings
import pkg_resources as pkg
import torch
from torch.utils.tensorboard import SummaryWriter
from utils.general import colorstr, cv2, emojis
from utils.loggers.wandb.wandb_utils import WandbLogger
from utils.plots import plot_images, plot_results
from utils.torch_utils import de_parallel
LOGGERS = ('csv', 'tb', 'wandb') # text-file, TensorBoard, Weights & Biases
RANK = int(os.getenv('RANK', -1))
try:
import wandb
assert hasattr(wandb, '__version__') # verify package import not local dir
if pkg.parse_version(wandb.__version__) >= pkg.parse_version('0.12.2') and RANK in {0, -1}:
try:
wandb_login_success = wandb.login(timeout=30)
except wandb.errors.UsageError: # known non-TTY terminal issue
wandb_login_success = False
if not wandb_login_success:
wandb = None
except (ImportError, AssertionError):
wandb = None
class Loggers():
# YOLOv5 Loggers class
def __init__(self, save_dir=None, weights=None, opt=None, hyp=None, logger=None, include=LOGGERS):
self.save_dir = save_dir
self.weights = weights
self.opt = opt
self.hyp = hyp
self.logger = logger # for printing results to console
self.include = include
self.keys = [
'train/box_loss',
'train/obj_loss',
'train/cls_loss', # train loss
'metrics/precision',
'metrics/recall',
'metrics/mAP_0.5',
'metrics/mAP_0.5:0.95', # metrics
'val/box_loss',
'val/obj_loss',
'val/cls_loss', # val loss
'x/lr0',
'x/lr1',
'x/lr2'] # params
self.best_keys = ['best/epoch', 'best/precision', 'best/recall', 'best/mAP_0.5', 'best/mAP_0.5:0.95']
for k in LOGGERS:
setattr(self, k, None) # init empty logger dictionary
self.csv = True # always log to csv
# Message
if not wandb:
prefix = colorstr('Weights & Biases: ')
s = f"{prefix}run 'pip install wandb' to automatically track and visualize YOLOv5 🚀 runs (RECOMMENDED)"
self.logger.info(emojis(s))
# TensorBoard
s = self.save_dir
if 'tb' in self.include and not self.opt.evolve:
prefix = colorstr('TensorBoard: ')
self.logger.info(f"{prefix}Start with 'tensorboard --logdir {s.parent}', view at http://localhost:6006/")
self.tb = SummaryWriter(str(s))
# W&B
if wandb and 'wandb' in self.include:
wandb_artifact_resume = isinstance(self.opt.resume, str) and self.opt.resume.startswith('wandb-artifact://')
run_id = torch.load(self.weights).get('wandb_id') if self.opt.resume and not wandb_artifact_resume else None
self.opt.hyp = self.hyp # add hyperparameters
self.wandb = WandbLogger(self.opt, run_id)
# temp warn. because nested artifacts not supported after 0.12.10
if pkg.parse_version(wandb.__version__) >= pkg.parse_version('0.12.11'):
self.logger.warning(
"YOLOv5 temporarily requires wandb version 0.12.10 or below. Some features may not work as expected."
)
else:
self.wandb = None
def on_train_start(self):
# Callback runs on train start
pass
def on_pretrain_routine_end(self):
# Callback runs on pre-train routine end
paths = self.save_dir.glob('*labels*.jpg') # training labels
if self.wandb:
self.wandb.log({"Labels": [wandb.Image(str(x), caption=x.name) for x in paths]})
def on_train_batch_end(self, ni, model, imgs, targets, paths, plots):
# Callback runs on train batch end
if plots:
if ni == 0:
if not self.opt.sync_bn: # --sync known issue https://github.com/ultralytics/yolov5/issues/3754
with warnings.catch_warnings():
warnings.simplefilter('ignore') # suppress jit trace warning
self.tb.add_graph(torch.jit.trace(de_parallel(model), imgs[0:1], strict=False), [])
if ni < 3:
f = self.save_dir / f'train_batch{ni}.jpg' # filename
plot_images(imgs, targets, paths, f)
if self.wandb and ni == 10:
files = sorted(self.save_dir.glob('train*.jpg'))
self.wandb.log({'Mosaics': [wandb.Image(str(f), caption=f.name) for f in files if f.exists()]})
def on_train_epoch_end(self, epoch):
# Callback runs on train epoch end
if self.wandb:
self.wandb.current_epoch = epoch + 1
def on_val_image_end(self, pred, predn, path, names, im):
# Callback runs on val image end
if self.wandb:
self.wandb.val_one_image(pred, predn, path, names, im)
def on_val_end(self):
# Callback runs on val end
if self.wandb:
files = sorted(self.save_dir.glob('val*.jpg'))
self.wandb.log({"Validation": [wandb.Image(str(f), caption=f.name) for f in files]})
def on_fit_epoch_end(self, vals, epoch, best_fitness, fi):
# Callback runs at the end of each fit (train+val) epoch
x = dict(zip(self.keys, vals))
if self.csv:
file = self.save_dir / 'results.csv'
n = len(x) + 1 # number of cols
s = '' if file.exists() else (('%20s,' * n % tuple(['epoch'] + self.keys)).rstrip(',') + '\n') # add header
with open(file, 'a') as f:
f.write(s + ('%20.5g,' * n % tuple([epoch] + vals)).rstrip(',') + '\n')
if self.tb:
for k, v in x.items():
self.tb.add_scalar(k, v, epoch)
if self.wandb:
if best_fitness == fi:
best_results = [epoch] + vals[3:7]
for i, name in enumerate(self.best_keys):
self.wandb.wandb_run.summary[name] = best_results[i] # log best results in the summary
self.wandb.log(x)
self.wandb.end_epoch(best_result=best_fitness == fi)
def on_model_save(self, last, epoch, final_epoch, best_fitness, fi):
# Callback runs on model save event
if self.wandb:
if ((epoch + 1) % self.opt.save_period == 0 and not final_epoch) and self.opt.save_period != -1:
self.wandb.log_model(last.parent, self.opt, epoch, fi, best_model=best_fitness == fi)
def on_train_end(self, last, best, plots, epoch, results):
# Callback runs on training end
if plots:
plot_results(file=self.save_dir / 'results.csv') # save results.png
files = ['results.png', 'confusion_matrix.png', *(f'{x}_curve.png' for x in ('F1', 'PR', 'P', 'R'))]
files = [(self.save_dir / f) for f in files if (self.save_dir / f).exists()] # filter
self.logger.info(f"Results saved to {colorstr('bold', self.save_dir)}")
if self.tb:
for f in files:
self.tb.add_image(f.stem, cv2.imread(str(f))[..., ::-1], epoch, dataformats='HWC')
if self.wandb:
self.wandb.log(dict(zip(self.keys[3:10], results)))
self.wandb.log({"Results": [wandb.Image(str(f), caption=f.name) for f in files]})
# Calling wandb.log. TODO: Refactor this into WandbLogger.log_model
if not self.opt.evolve:
wandb.log_artifact(str(best if best.exists() else last),
type='model',
name=f'run_{self.wandb.wandb_run.id}_model',
aliases=['latest', 'best', 'stripped'])
self.wandb.finish_run()
def on_params_update(self, params):
# Update hyperparams or configs of the experiment
# params: A dict containing {param: value} pairs
if self.wandb:
self.wandb.wandb_run.config.update(params, allow_val_change=True)
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📚 This guide explains how to use **Weights & Biases** (W&B) with YOLOv5 🚀. UPDATED 29 September 2021.
- [About Weights & Biases](#about-weights-&-biases)
- [First-Time Setup](#first-time-setup)
- [Viewing runs](#viewing-runs)
- [Disabling wandb](#disabling-wandb)
- [Advanced Usage: Dataset Versioning and Evaluation](#advanced-usage)
- [Reports: Share your work with the world!](#reports)
## About Weights & Biases
Think of [W&B](https://wandb.ai/site?utm_campaign=repo_yolo_wandbtutorial) like GitHub for machine learning models. With a few lines of code, save everything you need to debug, compare and reproduce your models — architecture, hyperparameters, git commits, model weights, GPU usage, and even datasets and predictions.
Used by top researchers including teams at OpenAI, Lyft, Github, and MILA, W&B is part of the new standard of best practices for machine learning. How W&B can help you optimize your machine learning workflows:
- [Debug](https://wandb.ai/wandb/getting-started/reports/Visualize-Debug-Machine-Learning-Models--VmlldzoyNzY5MDk#Free-2) model performance in real time
- [GPU usage](https://wandb.ai/wandb/getting-started/reports/Visualize-Debug-Machine-Learning-Models--VmlldzoyNzY5MDk#System-4) visualized automatically
- [Custom charts](https://wandb.ai/wandb/customizable-charts/reports/Powerful-Custom-Charts-To-Debug-Model-Peformance--VmlldzoyNzY4ODI) for powerful, extensible visualization
- [Share insights](https://wandb.ai/wandb/getting-started/reports/Visualize-Debug-Machine-Learning-Models--VmlldzoyNzY5MDk#Share-8) interactively with collaborators
- [Optimize hyperparameters](https://docs.wandb.com/sweeps) efficiently
- [Track](https://docs.wandb.com/artifacts) datasets, pipelines, and production models
## First-Time Setup
<details open>
<summary> Toggle Details </summary>
When you first train, W&B will prompt you to create a new account and will generate an **API key** for you. If you are an existing user you can retrieve your key from https://wandb.ai/authorize. This key is used to tell W&B where to log your data. You only need to supply your key once, and then it is remembered on the same device.
W&B will create a cloud **project** (default is 'YOLOv5') for your training runs, and each new training run will be provided a unique run **name** within that project as project/name. You can also manually set your project and run name as:
```shell
$ python train.py --project ... --name ...
```
YOLOv5 notebook example: <a href="https://colab.research.google.com/github/ultralytics/yolov5/blob/master/tutorial.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"></a> <a href="https://www.kaggle.com/ultralytics/yolov5"><img src="https://kaggle.com/static/images/open-in-kaggle.svg" alt="Open In Kaggle"></a>
<img width="960" alt="Screen Shot 2021-09-29 at 10 23 13 PM" src="https://user-images.githubusercontent.com/26833433/135392431-1ab7920a-c49d-450a-b0b0-0c86ec86100e.png">
</details>
## Viewing Runs
<details open>
<summary> Toggle Details </summary>
Run information streams from your environment to the W&B cloud console as you train. This allows you to monitor and even cancel runs in <b>realtime</b> . All important information is logged:
- Training & Validation losses
- Metrics: Precision, Recall, mAP@0.5, mAP@0.5:0.95
- Learning Rate over time
- A bounding box debugging panel, showing the training progress over time
- GPU: Type, **GPU Utilization**, power, temperature, **CUDA memory usage**
- System: Disk I/0, CPU utilization, RAM memory usage
- Your trained model as W&B Artifact
- Environment: OS and Python types, Git repository and state, **training command**
<p align="center"><img width="900" alt="Weights & Biases dashboard" src="https://user-images.githubusercontent.com/26833433/135390767-c28b050f-8455-4004-adb0-3b730386e2b2.png"></p>
</details>
## Disabling wandb
- training after running `wandb disabled` inside that directory creates no wandb run
![Screenshot (84)](https://user-images.githubusercontent.com/15766192/143441777-c780bdd7-7cb4-4404-9559-b4316030a985.png)
- To enable wandb again, run `wandb online`
![Screenshot (85)](https://user-images.githubusercontent.com/15766192/143441866-7191b2cb-22f0-4e0f-ae64-2dc47dc13078.png)
## Advanced Usage
You can leverage W&B artifacts and Tables integration to easily visualize and manage your datasets, models and training evaluations. Here are some quick examples to get you started.
<details open>
<h3> 1: Train and Log Evaluation simultaneousy </h3>
This is an extension of the previous section, but it'll also training after uploading the dataset. <b> This also evaluation Table</b>
Evaluation table compares your predictions and ground truths across the validation set for each epoch. It uses the references to the already uploaded datasets,
so no images will be uploaded from your system more than once.
<details open>
<summary> <b>Usage</b> </summary>
<b>Code</b> <code> $ python train.py --upload_data val</code>
![Screenshot from 2021-11-21 17-40-06](https://user-images.githubusercontent.com/15766192/142761183-c1696d8c-3f38-45ab-991a-bb0dfd98ae7d.png)
</details>
<h3>2. Visualize and Version Datasets</h3>
Log, visualize, dynamically query, and understand your data with <a href='https://docs.wandb.ai/guides/data-vis/tables'>W&B Tables</a>. You can use the following command to log your dataset as a W&B Table. This will generate a <code>{dataset}_wandb.yaml</code> file which can be used to train from dataset artifact.
<details>
<summary> <b>Usage</b> </summary>
<b>Code</b> <code> $ python utils/logger/wandb/log_dataset.py --project ... --name ... --data .. </code>
![Screenshot (64)](https://user-images.githubusercontent.com/15766192/128486078-d8433890-98a3-4d12-8986-b6c0e3fc64b9.png)
</details>
<h3> 3: Train using dataset artifact </h3>
When you upload a dataset as described in the first section, you get a new config file with an added `_wandb` to its name. This file contains the information that
can be used to train a model directly from the dataset artifact. <b> This also logs evaluation </b>
<details>
<summary> <b>Usage</b> </summary>
<b>Code</b> <code> $ python train.py --data {data}_wandb.yaml </code>
![Screenshot (72)](https://user-images.githubusercontent.com/15766192/128979739-4cf63aeb-a76f-483f-8861-1c0100b938a5.png)
</details>
<h3> 4: Save model checkpoints as artifacts </h3>
To enable saving and versioning checkpoints of your experiment, pass `--save_period n` with the base cammand, where `n` represents checkpoint interval.
You can also log both the dataset and model checkpoints simultaneously. If not passed, only the final model will be logged
<details>
<summary> <b>Usage</b> </summary>
<b>Code</b> <code> $ python train.py --save_period 1 </code>
![Screenshot (68)](https://user-images.githubusercontent.com/15766192/128726138-ec6c1f60-639d-437d-b4ee-3acd9de47ef3.png)
</details>
</details>
<h3> 5: Resume runs from checkpoint artifacts. </h3>
Any run can be resumed using artifacts if the <code>--resume</code> argument starts with <code>wandb-artifact://</code> prefix followed by the run path, i.e, <code>wandb-artifact://username/project/runid </code>. This doesn't require the model checkpoint to be present on the local system.
<details>
<summary> <b>Usage</b> </summary>
<b>Code</b> <code> $ python train.py --resume wandb-artifact://{run_path} </code>
![Screenshot (70)](https://user-images.githubusercontent.com/15766192/128728988-4e84b355-6c87-41ae-a591-14aecf45343e.png)
</details>
<h3> 6: Resume runs from dataset artifact & checkpoint artifacts. </h3>
<b> Local dataset or model checkpoints are not required. This can be used to resume runs directly on a different device </b>
The syntax is same as the previous section, but you'll need to lof both the dataset and model checkpoints as artifacts, i.e, set bot <code>--upload_dataset</code> or
train from <code>_wandb.yaml</code> file and set <code>--save_period</code>
<details>
<summary> <b>Usage</b> </summary>
<b>Code</b> <code> $ python train.py --resume wandb-artifact://{run_path} </code>
![Screenshot (70)](https://user-images.githubusercontent.com/15766192/128728988-4e84b355-6c87-41ae-a591-14aecf45343e.png)
</details>
</details>
<h3> Reports </h3>
W&B Reports can be created from your saved runs for sharing online. Once a report is created you will receive a link you can use to publically share your results. Here is an example report created from the COCO128 tutorial trainings of all four YOLOv5 models ([link](https://wandb.ai/glenn-jocher/yolov5_tutorial/reports/YOLOv5-COCO128-Tutorial-Results--VmlldzozMDI5OTY)).
<img width="900" alt="Weights & Biases Reports" src="https://user-images.githubusercontent.com/26833433/135394029-a17eaf86-c6c1-4b1d-bb80-b90e83aaffa7.png">
## Environments
YOLOv5 may be run in any of the following up-to-date verified environments (with all dependencies including [CUDA](https://developer.nvidia.com/cuda)/[CUDNN](https://developer.nvidia.com/cudnn), [Python](https://www.python.org/) and [PyTorch](https://pytorch.org/) preinstalled):
- **Google Colab and Kaggle** notebooks with free GPU: <a href="https://colab.research.google.com/github/ultralytics/yolov5/blob/master/tutorial.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"></a> <a href="https://www.kaggle.com/ultralytics/yolov5"><img src="https://kaggle.com/static/images/open-in-kaggle.svg" alt="Open In Kaggle"></a>
- **Google Cloud** Deep Learning VM. See [GCP Quickstart Guide](https://github.com/ultralytics/yolov5/wiki/GCP-Quickstart)
- **Amazon** Deep Learning AMI. See [AWS Quickstart Guide](https://github.com/ultralytics/yolov5/wiki/AWS-Quickstart)
- **Docker Image**. See [Docker Quickstart Guide](https://github.com/ultralytics/yolov5/wiki/Docker-Quickstart) <a href="https://hub.docker.com/r/ultralytics/yolov5"><img src="https://img.shields.io/docker/pulls/ultralytics/yolov5?logo=docker" alt="Docker Pulls"></a>
## Status
![CI CPU testing](https://github.com/ultralytics/yolov5/workflows/CI%20CPU%20testing/badge.svg)
If this badge is green, all [YOLOv5 GitHub Actions](https://github.com/ultralytics/yolov5/actions) Continuous Integration (CI) tests are currently passing. CI tests verify correct operation of YOLOv5 training ([train.py](https://github.com/ultralytics/yolov5/blob/master/train.py)), validation ([val.py](https://github.com/ultralytics/yolov5/blob/master/val.py)), inference ([detect.py](https://github.com/ultralytics/yolov5/blob/master/detect.py)) and export ([export.py](https://github.com/ultralytics/yolov5/blob/master/export.py)) on macOS, Windows, and Ubuntu every 24 hours and on every commit.
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import argparse
from wandb_utils import WandbLogger
from utils.general import LOGGER
WANDB_ARTIFACT_PREFIX = 'wandb-artifact://'
def create_dataset_artifact(opt):
logger = WandbLogger(opt, None, job_type='Dataset Creation') # TODO: return value unused
if not logger.wandb:
LOGGER.info("install wandb using `pip install wandb` to log the dataset")
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument('--data', type=str, default='data/coco128.yaml', help='data.yaml path')
parser.add_argument('--single-cls', action='store_true', help='train as single-class dataset')
parser.add_argument('--project', type=str, default='YOLOv5', help='name of W&B Project')
parser.add_argument('--entity', default=None, help='W&B entity')
parser.add_argument('--name', type=str, default='log dataset', help='name of W&B run')
opt = parser.parse_args()
opt.resume = False # Explicitly disallow resume check for dataset upload job
create_dataset_artifact(opt)
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import sys
from pathlib import Path
import wandb
FILE = Path(__file__).resolve()
ROOT = FILE.parents[3] # YOLOv5 root directory
if str(ROOT) not in sys.path:
sys.path.append(str(ROOT)) # add ROOT to PATH
from train import parse_opt, train
from utils.callbacks import Callbacks
from utils.general import increment_path
from utils.torch_utils import select_device
def sweep():
wandb.init()
# Get hyp dict from sweep agent. Copy because train() modifies parameters which confused wandb.
hyp_dict = vars(wandb.config).get("_items").copy()
# Workaround: get necessary opt args
opt = parse_opt(known=True)
opt.batch_size = hyp_dict.get("batch_size")
opt.save_dir = str(increment_path(Path(opt.project) / opt.name, exist_ok=opt.exist_ok or opt.evolve))
opt.epochs = hyp_dict.get("epochs")
opt.nosave = True
opt.data = hyp_dict.get("data")
opt.weights = str(opt.weights)
opt.cfg = str(opt.cfg)
opt.data = str(opt.data)
opt.hyp = str(opt.hyp)
opt.project = str(opt.project)
device = select_device(opt.device, batch_size=opt.batch_size)
# train
train(hyp_dict, opt, device, callbacks=Callbacks())
if __name__ == "__main__":
sweep()
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# Hyperparameters for training
# To set range-
# Provide min and max values as:
# parameter:
#
# min: scalar
# max: scalar
# OR
#
# Set a specific list of search space-
# parameter:
# values: [scalar1, scalar2, scalar3...]
#
# You can use grid, bayesian and hyperopt search strategy
# For more info on configuring sweeps visit - https://docs.wandb.ai/guides/sweeps/configuration
program: utils/loggers/wandb/sweep.py
method: random
metric:
name: metrics/mAP_0.5
goal: maximize
parameters:
# hyperparameters: set either min, max range or values list
data:
value: "data/coco128.yaml"
batch_size:
values: [64]
epochs:
values: [10]
lr0:
distribution: uniform
min: 1e-5
max: 1e-1
lrf:
distribution: uniform
min: 0.01
max: 1.0
momentum:
distribution: uniform
min: 0.6
max: 0.98
weight_decay:
distribution: uniform
min: 0.0
max: 0.001
warmup_epochs:
distribution: uniform
min: 0.0
max: 5.0
warmup_momentum:
distribution: uniform
min: 0.0
max: 0.95
warmup_bias_lr:
distribution: uniform
min: 0.0
max: 0.2
box:
distribution: uniform
min: 0.02
max: 0.2
cls:
distribution: uniform
min: 0.2
max: 4.0
cls_pw:
distribution: uniform
min: 0.5
max: 2.0
obj:
distribution: uniform
min: 0.2
max: 4.0
obj_pw:
distribution: uniform
min: 0.5
max: 2.0
iou_t:
distribution: uniform
min: 0.1
max: 0.7
anchor_t:
distribution: uniform
min: 2.0
max: 8.0
fl_gamma:
distribution: uniform
min: 0.0
max: 4.0
hsv_h:
distribution: uniform
min: 0.0
max: 0.1
hsv_s:
distribution: uniform
min: 0.0
max: 0.9
hsv_v:
distribution: uniform
min: 0.0
max: 0.9
degrees:
distribution: uniform
min: 0.0
max: 45.0
translate:
distribution: uniform
min: 0.0
max: 0.9
scale:
distribution: uniform
min: 0.0
max: 0.9
shear:
distribution: uniform
min: 0.0
max: 10.0
perspective:
distribution: uniform
min: 0.0
max: 0.001
flipud:
distribution: uniform
min: 0.0
max: 1.0
fliplr:
distribution: uniform
min: 0.0
max: 1.0
mosaic:
distribution: uniform
min: 0.0
max: 1.0
mixup:
distribution: uniform
min: 0.0
max: 1.0
copy_paste:
distribution: uniform
min: 0.0
max: 1.0
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"""Utilities and tools for tracking runs with Weights & Biases."""
import logging
import os
import sys
from contextlib import contextmanager
from pathlib import Path
from typing import Dict
import yaml
from tqdm import tqdm
FILE = Path(__file__).resolve()
ROOT = FILE.parents[3] # YOLOv5 root directory
if str(ROOT) not in sys.path:
sys.path.append(str(ROOT)) # add ROOT to PATH
from utils.dataloaders import LoadImagesAndLabels, img2label_paths
from utils.general import LOGGER, check_dataset, check_file
try:
import wandb
assert hasattr(wandb, '__version__') # verify package import not local dir
except (ImportError, AssertionError):
wandb = None
RANK = int(os.getenv('RANK', -1))
WANDB_ARTIFACT_PREFIX = 'wandb-artifact://'
def remove_prefix(from_string, prefix=WANDB_ARTIFACT_PREFIX):
return from_string[len(prefix):]
def check_wandb_config_file(data_config_file):
wandb_config = '_wandb.'.join(data_config_file.rsplit('.', 1)) # updated data.yaml path
if Path(wandb_config).is_file():
return wandb_config
return data_config_file
def check_wandb_dataset(data_file):
is_trainset_wandb_artifact = False
is_valset_wandb_artifact = False
if check_file(data_file) and data_file.endswith('.yaml'):
with open(data_file, errors='ignore') as f:
data_dict = yaml.safe_load(f)
is_trainset_wandb_artifact = isinstance(data_dict['train'],
str) and data_dict['train'].startswith(WANDB_ARTIFACT_PREFIX)
is_valset_wandb_artifact = isinstance(data_dict['val'],
str) and data_dict['val'].startswith(WANDB_ARTIFACT_PREFIX)
if is_trainset_wandb_artifact or is_valset_wandb_artifact:
return data_dict
else:
return check_dataset(data_file)
def get_run_info(run_path):
run_path = Path(remove_prefix(run_path, WANDB_ARTIFACT_PREFIX))
run_id = run_path.stem
project = run_path.parent.stem
entity = run_path.parent.parent.stem
model_artifact_name = 'run_' + run_id + '_model'
return entity, project, run_id, model_artifact_name
def check_wandb_resume(opt):
process_wandb_config_ddp_mode(opt) if RANK not in [-1, 0] else None
if isinstance(opt.resume, str):
if opt.resume.startswith(WANDB_ARTIFACT_PREFIX):
if RANK not in [-1, 0]: # For resuming DDP runs
entity, project, run_id, model_artifact_name = get_run_info(opt.resume)
api = wandb.Api()
artifact = api.artifact(entity + '/' + project + '/' + model_artifact_name + ':latest')
modeldir = artifact.download()
opt.weights = str(Path(modeldir) / "last.pt")
return True
return None
def process_wandb_config_ddp_mode(opt):
with open(check_file(opt.data), errors='ignore') as f:
data_dict = yaml.safe_load(f) # data dict
train_dir, val_dir = None, None
if isinstance(data_dict['train'], str) and data_dict['train'].startswith(WANDB_ARTIFACT_PREFIX):
api = wandb.Api()
train_artifact = api.artifact(remove_prefix(data_dict['train']) + ':' + opt.artifact_alias)
train_dir = train_artifact.download()
train_path = Path(train_dir) / 'data/images/'
data_dict['train'] = str(train_path)
if isinstance(data_dict['val'], str) and data_dict['val'].startswith(WANDB_ARTIFACT_PREFIX):
api = wandb.Api()
val_artifact = api.artifact(remove_prefix(data_dict['val']) + ':' + opt.artifact_alias)
val_dir = val_artifact.download()
val_path = Path(val_dir) / 'data/images/'
data_dict['val'] = str(val_path)
if train_dir or val_dir:
ddp_data_path = str(Path(val_dir) / 'wandb_local_data.yaml')
with open(ddp_data_path, 'w') as f:
yaml.safe_dump(data_dict, f)
opt.data = ddp_data_path
class WandbLogger():
"""Log training runs, datasets, models, and predictions to Weights & Biases.
This logger sends information to W&B at wandb.ai. By default, this information
includes hyperparameters, system configuration and metrics, model metrics,
and basic data metrics and analyses.
By providing additional command line arguments to train.py, datasets,
models and predictions can also be logged.
For more on how this logger is used, see the Weights & Biases documentation:
https://docs.wandb.com/guides/integrations/yolov5
"""
def __init__(self, opt, run_id=None, job_type='Training'):
"""
- Initialize WandbLogger instance
- Upload dataset if opt.upload_dataset is True
- Setup trainig processes if job_type is 'Training'
arguments:
opt (namespace) -- Commandline arguments for this run
run_id (str) -- Run ID of W&B run to be resumed
job_type (str) -- To set the job_type for this run
"""
# Pre-training routine --
self.job_type = job_type
self.wandb, self.wandb_run = wandb, None if not wandb else wandb.run
self.val_artifact, self.train_artifact = None, None
self.train_artifact_path, self.val_artifact_path = None, None
self.result_artifact = None
self.val_table, self.result_table = None, None
self.bbox_media_panel_images = []
self.val_table_path_map = None
self.max_imgs_to_log = 16
self.wandb_artifact_data_dict = None
self.data_dict = None
# It's more elegant to stick to 1 wandb.init call,
# but useful config data is overwritten in the WandbLogger's wandb.init call
if isinstance(opt.resume, str): # checks resume from artifact
if opt.resume.startswith(WANDB_ARTIFACT_PREFIX):
entity, project, run_id, model_artifact_name = get_run_info(opt.resume)
model_artifact_name = WANDB_ARTIFACT_PREFIX + model_artifact_name
assert wandb, 'install wandb to resume wandb runs'
# Resume wandb-artifact:// runs here| workaround for not overwriting wandb.config
self.wandb_run = wandb.init(id=run_id,
project=project,
entity=entity,
resume='allow',
allow_val_change=True)
opt.resume = model_artifact_name
elif self.wandb:
self.wandb_run = wandb.init(config=opt,
resume="allow",
project='YOLOv5' if opt.project == 'runs/train' else Path(opt.project).stem,
entity=opt.entity,
name=opt.name if opt.name != 'exp' else None,
job_type=job_type,
id=run_id,
allow_val_change=True) if not wandb.run else wandb.run
if self.wandb_run:
if self.job_type == 'Training':
if opt.upload_dataset:
if not opt.resume:
self.wandb_artifact_data_dict = self.check_and_upload_dataset(opt)
if opt.resume:
# resume from artifact
if isinstance(opt.resume, str) and opt.resume.startswith(WANDB_ARTIFACT_PREFIX):
self.data_dict = dict(self.wandb_run.config.data_dict)
else: # local resume
self.data_dict = check_wandb_dataset(opt.data)
else:
self.data_dict = check_wandb_dataset(opt.data)
self.wandb_artifact_data_dict = self.wandb_artifact_data_dict or self.data_dict
# write data_dict to config. useful for resuming from artifacts. Do this only when not resuming.
self.wandb_run.config.update({'data_dict': self.wandb_artifact_data_dict}, allow_val_change=True)
self.setup_training(opt)
if self.job_type == 'Dataset Creation':
self.wandb_run.config.update({"upload_dataset": True})
self.data_dict = self.check_and_upload_dataset(opt)
def check_and_upload_dataset(self, opt):
"""
Check if the dataset format is compatible and upload it as W&B artifact
arguments:
opt (namespace)-- Commandline arguments for current run
returns:
Updated dataset info dictionary where local dataset paths are replaced by WAND_ARFACT_PREFIX links.
"""
assert wandb, 'Install wandb to upload dataset'
config_path = self.log_dataset_artifact(opt.data, opt.single_cls,
'YOLOv5' if opt.project == 'runs/train' else Path(opt.project).stem)
with open(config_path, errors='ignore') as f:
wandb_data_dict = yaml.safe_load(f)
return wandb_data_dict
def setup_training(self, opt):
"""
Setup the necessary processes for training YOLO models:
- Attempt to download model checkpoint and dataset artifacts if opt.resume stats with WANDB_ARTIFACT_PREFIX
- Update data_dict, to contain info of previous run if resumed and the paths of dataset artifact if downloaded
- Setup log_dict, initialize bbox_interval
arguments:
opt (namespace) -- commandline arguments for this run
"""
self.log_dict, self.current_epoch = {}, 0
self.bbox_interval = opt.bbox_interval
if isinstance(opt.resume, str):
modeldir, _ = self.download_model_artifact(opt)
if modeldir:
self.weights = Path(modeldir) / "last.pt"
config = self.wandb_run.config
opt.weights, opt.save_period, opt.batch_size, opt.bbox_interval, opt.epochs, opt.hyp, opt.imgsz = str(
self.weights), config.save_period, config.batch_size, config.bbox_interval, config.epochs,\
config.hyp, config.imgsz
data_dict = self.data_dict
if self.val_artifact is None: # If --upload_dataset is set, use the existing artifact, don't download
self.train_artifact_path, self.train_artifact = self.download_dataset_artifact(
data_dict.get('train'), opt.artifact_alias)
self.val_artifact_path, self.val_artifact = self.download_dataset_artifact(
data_dict.get('val'), opt.artifact_alias)
if self.train_artifact_path is not None:
train_path = Path(self.train_artifact_path) / 'data/images/'
data_dict['train'] = str(train_path)
if self.val_artifact_path is not None:
val_path = Path(self.val_artifact_path) / 'data/images/'
data_dict['val'] = str(val_path)
if self.val_artifact is not None:
self.result_artifact = wandb.Artifact("run_" + wandb.run.id + "_progress", "evaluation")
columns = ["epoch", "id", "ground truth", "prediction"]
columns.extend(self.data_dict['names'])
self.result_table = wandb.Table(columns)
self.val_table = self.val_artifact.get("val")
if self.val_table_path_map is None:
self.map_val_table_path()
if opt.bbox_interval == -1:
self.bbox_interval = opt.bbox_interval = (opt.epochs // 10) if opt.epochs > 10 else 1
if opt.evolve or opt.noplots:
self.bbox_interval = opt.bbox_interval = opt.epochs + 1 # disable bbox_interval
train_from_artifact = self.train_artifact_path is not None and self.val_artifact_path is not None
# Update the the data_dict to point to local artifacts dir
if train_from_artifact:
self.data_dict = data_dict
def download_dataset_artifact(self, path, alias):
"""
download the model checkpoint artifact if the path starts with WANDB_ARTIFACT_PREFIX
arguments:
path -- path of the dataset to be used for training
alias (str)-- alias of the artifact to be download/used for training
returns:
(str, wandb.Artifact) -- path of the downladed dataset and it's corresponding artifact object if dataset
is found otherwise returns (None, None)
"""
if isinstance(path, str) and path.startswith(WANDB_ARTIFACT_PREFIX):
artifact_path = Path(remove_prefix(path, WANDB_ARTIFACT_PREFIX) + ":" + alias)
dataset_artifact = wandb.use_artifact(artifact_path.as_posix().replace("\\", "/"))
assert dataset_artifact is not None, "'Error: W&B dataset artifact doesn\'t exist'"
datadir = dataset_artifact.download()
return datadir, dataset_artifact
return None, None
def download_model_artifact(self, opt):
"""
download the model checkpoint artifact if the resume path starts with WANDB_ARTIFACT_PREFIX
arguments:
opt (namespace) -- Commandline arguments for this run
"""
if opt.resume.startswith(WANDB_ARTIFACT_PREFIX):
model_artifact = wandb.use_artifact(remove_prefix(opt.resume, WANDB_ARTIFACT_PREFIX) + ":latest")
assert model_artifact is not None, 'Error: W&B model artifact doesn\'t exist'
modeldir = model_artifact.download()
# epochs_trained = model_artifact.metadata.get('epochs_trained')
total_epochs = model_artifact.metadata.get('total_epochs')
is_finished = total_epochs is None
assert not is_finished, 'training is finished, can only resume incomplete runs.'
return modeldir, model_artifact
return None, None
def log_model(self, path, opt, epoch, fitness_score, best_model=False):
"""
Log the model checkpoint as W&B artifact
arguments:
path (Path) -- Path of directory containing the checkpoints
opt (namespace) -- Command line arguments for this run
epoch (int) -- Current epoch number
fitness_score (float) -- fitness score for current epoch
best_model (boolean) -- Boolean representing if the current checkpoint is the best yet.
"""
model_artifact = wandb.Artifact('run_' + wandb.run.id + '_model',
type='model',
metadata={
'original_url': str(path),
'epochs_trained': epoch + 1,
'save period': opt.save_period,
'project': opt.project,
'total_epochs': opt.epochs,
'fitness_score': fitness_score})
model_artifact.add_file(str(path / 'last.pt'), name='last.pt')
wandb.log_artifact(model_artifact,
aliases=['latest', 'last', 'epoch ' + str(self.current_epoch), 'best' if best_model else ''])
LOGGER.info(f"Saving model artifact on epoch {epoch + 1}")
def log_dataset_artifact(self, data_file, single_cls, project, overwrite_config=False):
"""
Log the dataset as W&B artifact and return the new data file with W&B links
arguments:
data_file (str) -- the .yaml file with information about the dataset like - path, classes etc.
single_class (boolean) -- train multi-class data as single-class
project (str) -- project name. Used to construct the artifact path
overwrite_config (boolean) -- overwrites the data.yaml file if set to true otherwise creates a new
file with _wandb postfix. Eg -> data_wandb.yaml
returns:
the new .yaml file with artifact links. it can be used to start training directly from artifacts
"""
upload_dataset = self.wandb_run.config.upload_dataset
log_val_only = isinstance(upload_dataset, str) and upload_dataset == 'val'
self.data_dict = check_dataset(data_file) # parse and check
data = dict(self.data_dict)
nc, names = (1, ['item']) if single_cls else (int(data['nc']), data['names'])
names = {k: v for k, v in enumerate(names)} # to index dictionary
# log train set
if not log_val_only:
self.train_artifact = self.create_dataset_table(LoadImagesAndLabels(data['train'], rect=True, batch_size=1),
names,
name='train') if data.get('train') else None
if data.get('train'):
data['train'] = WANDB_ARTIFACT_PREFIX + str(Path(project) / 'train')
self.val_artifact = self.create_dataset_table(
LoadImagesAndLabels(data['val'], rect=True, batch_size=1), names, name='val') if data.get('val') else None
if data.get('val'):
data['val'] = WANDB_ARTIFACT_PREFIX + str(Path(project) / 'val')
path = Path(data_file)
# create a _wandb.yaml file with artifacts links if both train and test set are logged
if not log_val_only:
path = (path.stem if overwrite_config else path.stem + '_wandb') + '.yaml' # updated data.yaml path
path = ROOT / 'data' / path
data.pop('download', None)
data.pop('path', None)
with open(path, 'w') as f:
yaml.safe_dump(data, f)
LOGGER.info(f"Created dataset config file {path}")
if self.job_type == 'Training': # builds correct artifact pipeline graph
if not log_val_only:
self.wandb_run.log_artifact(
self.train_artifact) # calling use_artifact downloads the dataset. NOT NEEDED!
self.wandb_run.use_artifact(self.val_artifact)
self.val_artifact.wait()
self.val_table = self.val_artifact.get('val')
self.map_val_table_path()
else:
self.wandb_run.log_artifact(self.train_artifact)
self.wandb_run.log_artifact(self.val_artifact)
return path
def map_val_table_path(self):
"""
Map the validation dataset Table like name of file -> it's id in the W&B Table.
Useful for - referencing artifacts for evaluation.
"""
self.val_table_path_map = {}
LOGGER.info("Mapping dataset")
for i, data in enumerate(tqdm(self.val_table.data)):
self.val_table_path_map[data[3]] = data[0]
def create_dataset_table(self, dataset: LoadImagesAndLabels, class_to_id: Dict[int, str], name: str = 'dataset'):
"""
Create and return W&B artifact containing W&B Table of the dataset.
arguments:
dataset -- instance of LoadImagesAndLabels class used to iterate over the data to build Table
class_to_id -- hash map that maps class ids to labels
name -- name of the artifact
returns:
dataset artifact to be logged or used
"""
# TODO: Explore multiprocessing to slpit this loop parallely| This is essential for speeding up the the logging
artifact = wandb.Artifact(name=name, type="dataset")
img_files = tqdm([dataset.path]) if isinstance(dataset.path, str) and Path(dataset.path).is_dir() else None
img_files = tqdm(dataset.im_files) if not img_files else img_files
for img_file in img_files:
if Path(img_file).is_dir():
artifact.add_dir(img_file, name='data/images')
labels_path = 'labels'.join(dataset.path.rsplit('images', 1))
artifact.add_dir(labels_path, name='data/labels')
else:
artifact.add_file(img_file, name='data/images/' + Path(img_file).name)
label_file = Path(img2label_paths([img_file])[0])
artifact.add_file(str(label_file), name='data/labels/' +
label_file.name) if label_file.exists() else None
table = wandb.Table(columns=["id", "train_image", "Classes", "name"])
class_set = wandb.Classes([{'id': id, 'name': name} for id, name in class_to_id.items()])
for si, (img, labels, paths, shapes) in enumerate(tqdm(dataset)):
box_data, img_classes = [], {}
for cls, *xywh in labels[:, 1:].tolist():
cls = int(cls)
box_data.append({
"position": {
"middle": [xywh[0], xywh[1]],
"width": xywh[2],
"height": xywh[3]},
"class_id": cls,
"box_caption": "%s" % (class_to_id[cls])})
img_classes[cls] = class_to_id[cls]
boxes = {"ground_truth": {"box_data": box_data, "class_labels": class_to_id}} # inference-space
table.add_data(si, wandb.Image(paths, classes=class_set, boxes=boxes), list(img_classes.values()),
Path(paths).name)
artifact.add(table, name)
return artifact
def log_training_progress(self, predn, path, names):
"""
Build evaluation Table. Uses reference from validation dataset table.
arguments:
predn (list): list of predictions in the native space in the format - [xmin, ymin, xmax, ymax, confidence, class]
path (str): local path of the current evaluation image
names (dict(int, str)): hash map that maps class ids to labels
"""
class_set = wandb.Classes([{'id': id, 'name': name} for id, name in names.items()])
box_data = []
avg_conf_per_class = [0] * len(self.data_dict['names'])
pred_class_count = {}
for *xyxy, conf, cls in predn.tolist():
if conf >= 0.25:
cls = int(cls)
box_data.append({
"position": {
"minX": xyxy[0],
"minY": xyxy[1],
"maxX": xyxy[2],
"maxY": xyxy[3]},
"class_id": cls,
"box_caption": f"{names[cls]} {conf:.3f}",
"scores": {
"class_score": conf},
"domain": "pixel"})
avg_conf_per_class[cls] += conf
if cls in pred_class_count:
pred_class_count[cls] += 1
else:
pred_class_count[cls] = 1
for pred_class in pred_class_count.keys():
avg_conf_per_class[pred_class] = avg_conf_per_class[pred_class] / pred_class_count[pred_class]
boxes = {"predictions": {"box_data": box_data, "class_labels": names}} # inference-space
id = self.val_table_path_map[Path(path).name]
self.result_table.add_data(self.current_epoch, id, self.val_table.data[id][1],
wandb.Image(self.val_table.data[id][1], boxes=boxes, classes=class_set),
*avg_conf_per_class)
def val_one_image(self, pred, predn, path, names, im):
"""
Log validation data for one image. updates the result Table if validation dataset is uploaded and log bbox media panel
arguments:
pred (list): list of scaled predictions in the format - [xmin, ymin, xmax, ymax, confidence, class]
predn (list): list of predictions in the native space - [xmin, ymin, xmax, ymax, confidence, class]
path (str): local path of the current evaluation image
"""
if self.val_table and self.result_table: # Log Table if Val dataset is uploaded as artifact
self.log_training_progress(predn, path, names)
if len(self.bbox_media_panel_images) < self.max_imgs_to_log and self.current_epoch > 0:
if self.current_epoch % self.bbox_interval == 0:
box_data = [{
"position": {
"minX": xyxy[0],
"minY": xyxy[1],
"maxX": xyxy[2],
"maxY": xyxy[3]},
"class_id": int(cls),
"box_caption": f"{names[int(cls)]} {conf:.3f}",
"scores": {
"class_score": conf},
"domain": "pixel"} for *xyxy, conf, cls in pred.tolist()]
boxes = {"predictions": {"box_data": box_data, "class_labels": names}} # inference-space
self.bbox_media_panel_images.append(wandb.Image(im, boxes=boxes, caption=path.name))
def log(self, log_dict):
"""
save the metrics to the logging dictionary
arguments:
log_dict (Dict) -- metrics/media to be logged in current step
"""
if self.wandb_run:
for key, value in log_dict.items():
self.log_dict[key] = value
def end_epoch(self, best_result=False):
"""
commit the log_dict, model artifacts and Tables to W&B and flush the log_dict.
arguments:
best_result (boolean): Boolean representing if the result of this evaluation is best or not
"""
if self.wandb_run:
with all_logging_disabled():
if self.bbox_media_panel_images:
self.log_dict["BoundingBoxDebugger"] = self.bbox_media_panel_images
try:
wandb.log(self.log_dict)
except BaseException as e:
LOGGER.info(
f"An error occurred in wandb logger. The training will proceed without interruption. More info\n{e}"
)
self.wandb_run.finish()
self.wandb_run = None
self.log_dict = {}
self.bbox_media_panel_images = []
if self.result_artifact:
self.result_artifact.add(self.result_table, 'result')
wandb.log_artifact(self.result_artifact,
aliases=[
'latest', 'last', 'epoch ' + str(self.current_epoch),
('best' if best_result else '')])
wandb.log({"evaluation": self.result_table})
columns = ["epoch", "id", "ground truth", "prediction"]
columns.extend(self.data_dict['names'])
self.result_table = wandb.Table(columns)
self.result_artifact = wandb.Artifact("run_" + wandb.run.id + "_progress", "evaluation")
def finish_run(self):
"""
Log metrics if any and finish the current W&B run
"""
if self.wandb_run:
if self.log_dict:
with all_logging_disabled():
wandb.log(self.log_dict)
wandb.run.finish()
@contextmanager
def all_logging_disabled(highest_level=logging.CRITICAL):
""" source - https://gist.github.com/simon-weber/7853144
A context manager that will prevent any logging messages triggered during the body from being processed.
:param highest_level: the maximum logging level in use.
This would only need to be changed if a custom level greater than CRITICAL is defined.
"""
previous_level = logging.root.manager.disable
logging.disable(highest_level)
try:
yield
finally:
logging.disable(previous_level)
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Loss functions
"""
import torch
import torch.nn as nn
from utils.metrics import bbox_iou
from utils.torch_utils import de_parallel
def smooth_BCE(eps=0.1): # https://github.com/ultralytics/yolov3/issues/238#issuecomment-598028441
# return positive, negative label smoothing BCE targets
return 1.0 - 0.5 * eps, 0.5 * eps
class BCEBlurWithLogitsLoss(nn.Module):
# BCEwithLogitLoss() with reduced missing label effects.
def __init__(self, alpha=0.05):
super().__init__()
self.loss_fcn = nn.BCEWithLogitsLoss(reduction='none') # must be nn.BCEWithLogitsLoss()
self.alpha = alpha
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
pred = torch.sigmoid(pred) # prob from logits
dx = pred - true # reduce only missing label effects
# dx = (pred - true).abs() # reduce missing label and false label effects
alpha_factor = 1 - torch.exp((dx - 1) / (self.alpha + 1e-4))
loss *= alpha_factor
return loss.mean()
class FocalLoss(nn.Module):
# Wraps focal loss around existing loss_fcn(), i.e. criteria = FocalLoss(nn.BCEWithLogitsLoss(), gamma=1.5)
def __init__(self, loss_fcn, gamma=1.5, alpha=0.25):
super().__init__()
self.loss_fcn = loss_fcn # must be nn.BCEWithLogitsLoss()
self.gamma = gamma
self.alpha = alpha
self.reduction = loss_fcn.reduction
self.loss_fcn.reduction = 'none' # required to apply FL to each element
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
# p_t = torch.exp(-loss)
# loss *= self.alpha * (1.000001 - p_t) ** self.gamma # non-zero power for gradient stability
# TF implementation https://github.com/tensorflow/addons/blob/v0.7.1/tensorflow_addons/losses/focal_loss.py
pred_prob = torch.sigmoid(pred) # prob from logits
p_t = true * pred_prob + (1 - true) * (1 - pred_prob)
alpha_factor = true * self.alpha + (1 - true) * (1 - self.alpha)
modulating_factor = (1.0 - p_t) ** self.gamma
loss *= alpha_factor * modulating_factor
if self.reduction == 'mean':
return loss.mean()
elif self.reduction == 'sum':
return loss.sum()
else: # 'none'
return loss
class QFocalLoss(nn.Module):
# Wraps Quality focal loss around existing loss_fcn(), i.e. criteria = FocalLoss(nn.BCEWithLogitsLoss(), gamma=1.5)
def __init__(self, loss_fcn, gamma=1.5, alpha=0.25):
super().__init__()
self.loss_fcn = loss_fcn # must be nn.BCEWithLogitsLoss()
self.gamma = gamma
self.alpha = alpha
self.reduction = loss_fcn.reduction
self.loss_fcn.reduction = 'none' # required to apply FL to each element
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
pred_prob = torch.sigmoid(pred) # prob from logits
alpha_factor = true * self.alpha + (1 - true) * (1 - self.alpha)
modulating_factor = torch.abs(true - pred_prob) ** self.gamma
loss *= alpha_factor * modulating_factor
if self.reduction == 'mean':
return loss.mean()
elif self.reduction == 'sum':
return loss.sum()
else: # 'none'
return loss
class ComputeLoss:
sort_obj_iou = False
# Compute losses
def __init__(self, model, autobalance=False):
device = next(model.parameters()).device # get model device
h = model.hyp # hyperparameters
# Define criteria
BCEcls = nn.BCEWithLogitsLoss(pos_weight=torch.tensor([h['cls_pw']], device=device))
BCEobj = nn.BCEWithLogitsLoss(pos_weight=torch.tensor([h['obj_pw']], device=device))
# Class label smoothing https://arxiv.org/pdf/1902.04103.pdf eqn 3
self.cp, self.cn = smooth_BCE(eps=h.get('label_smoothing', 0.0)) # positive, negative BCE targets
# Focal loss
g = h['fl_gamma'] # focal loss gamma
if g > 0:
BCEcls, BCEobj = FocalLoss(BCEcls, g), FocalLoss(BCEobj, g)
m = de_parallel(model).model[-1] # Detect() module
self.balance = {3: [4.0, 1.0, 0.4]}.get(m.nl, [4.0, 1.0, 0.25, 0.06, 0.02]) # P3-P7
self.ssi = list(m.stride).index(16) if autobalance else 0 # stride 16 index
self.BCEcls, self.BCEobj, self.gr, self.hyp, self.autobalance = BCEcls, BCEobj, 1.0, h, autobalance
self.na = m.na # number of anchors
self.nc = m.nc # number of classes
self.nl = m.nl # number of layers
self.anchors = m.anchors
self.device = device
def __call__(self, p, targets): # predictions, targets
lcls = torch.zeros(1, device=self.device) # class loss
lbox = torch.zeros(1, device=self.device) # box loss
lobj = torch.zeros(1, device=self.device) # object loss
tcls, tbox, indices, anchors = self.build_targets(p, targets) # targets
# Losses
for i, pi in enumerate(p): # layer index, layer predictions
b, a, gj, gi = indices[i] # image, anchor, gridy, gridx
tobj = torch.zeros(pi.shape[:4], dtype=pi.dtype, device=self.device) # target obj
n = b.shape[0] # number of targets
if n:
# pxy, pwh, _, pcls = pi[b, a, gj, gi].tensor_split((2, 4, 5), dim=1) # faster, requires torch 1.8.0
pxy, pwh, _, pcls = pi[b, a, gj, gi].split((2, 2, 1, self.nc), 1) # target-subset of predictions
# Regression
pxy = pxy.sigmoid() * 2 - 0.5
pwh = (pwh.sigmoid() * 2) ** 2 * anchors[i]
pbox = torch.cat((pxy, pwh), 1) # predicted box
iou = bbox_iou(pbox, tbox[i], CIoU=True).squeeze() # iou(prediction, target)
lbox += (1.0 - iou).mean() # iou loss
# Objectness
iou = iou.detach().clamp(0).type(tobj.dtype)
if self.sort_obj_iou:
j = iou.argsort()
b, a, gj, gi, iou = b[j], a[j], gj[j], gi[j], iou[j]
if self.gr < 1:
iou = (1.0 - self.gr) + self.gr * iou
tobj[b, a, gj, gi] = iou # iou ratio
# Classification
if self.nc > 1: # cls loss (only if multiple classes)
t = torch.full_like(pcls, self.cn, device=self.device) # targets
t[range(n), tcls[i]] = self.cp
lcls += self.BCEcls(pcls, t) # BCE
# Append targets to text file
# with open('targets.txt', 'a') as file:
# [file.write('%11.5g ' * 4 % tuple(x) + '\n') for x in torch.cat((txy[i], twh[i]), 1)]
obji = self.BCEobj(pi[..., 4], tobj)
lobj += obji * self.balance[i] # obj loss
if self.autobalance:
self.balance[i] = self.balance[i] * 0.9999 + 0.0001 / obji.detach().item()
if self.autobalance:
self.balance = [x / self.balance[self.ssi] for x in self.balance]
lbox *= self.hyp['box']
lobj *= self.hyp['obj']
lcls *= self.hyp['cls']
bs = tobj.shape[0] # batch size
return (lbox + lobj + lcls) * bs, torch.cat((lbox, lobj, lcls)).detach()
def build_targets(self, p, targets):
# Build targets for compute_loss(), input targets(image,class,x,y,w,h)
na, nt = self.na, targets.shape[0] # number of anchors, targets
tcls, tbox, indices, anch = [], [], [], []
gain = torch.ones(7, device=self.device) # normalized to gridspace gain
ai = torch.arange(na, device=self.device).float().view(na, 1).repeat(1, nt) # same as .repeat_interleave(nt)
targets = torch.cat((targets.repeat(na, 1, 1), ai[..., None]), 2) # append anchor indices
g = 0.5 # bias
off = torch.tensor(
[
[0, 0],
[1, 0],
[0, 1],
[-1, 0],
[0, -1], # j,k,l,m
# [1, 1], [1, -1], [-1, 1], [-1, -1], # jk,jm,lk,lm
],
device=self.device).float() * g # offsets
for i in range(self.nl):
anchors, shape = self.anchors[i], p[i].shape
gain[2:6] = torch.tensor(shape)[[3, 2, 3, 2]] # xyxy gain
# Match targets to anchors
t = targets * gain # shape(3,n,7)
if nt:
# Matches
r = t[..., 4:6] / anchors[:, None] # wh ratio
j = torch.max(r, 1 / r).max(2)[0] < self.hyp['anchor_t'] # compare
# j = wh_iou(anchors, t[:, 4:6]) > model.hyp['iou_t'] # iou(3,n)=wh_iou(anchors(3,2), gwh(n,2))
t = t[j] # filter
# Offsets
gxy = t[:, 2:4] # grid xy
gxi = gain[[2, 3]] - gxy # inverse
j, k = ((gxy % 1 < g) & (gxy > 1)).T
l, m = ((gxi % 1 < g) & (gxi > 1)).T
j = torch.stack((torch.ones_like(j), j, k, l, m))
t = t.repeat((5, 1, 1))[j]
offsets = (torch.zeros_like(gxy)[None] + off[:, None])[j]
else:
t = targets[0]
offsets = 0
# Define
bc, gxy, gwh, a = t.chunk(4, 1) # (image, class), grid xy, grid wh, anchors
a, (b, c) = a.long().view(-1), bc.long().T # anchors, image, class
gij = (gxy - offsets).long()
gi, gj = gij.T # grid indices
# Append
indices.append((b, a, gj.clamp_(0, shape[2] - 1), gi.clamp_(0, shape[3] - 1))) # image, anchor, grid
tbox.append(torch.cat((gxy - gij, gwh), 1)) # box
anch.append(anchors[a]) # anchors
tcls.append(c) # class
return tcls, tbox, indices, anch
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Model validation metrics
"""
import math
import warnings
from pathlib import Path
import matplotlib.pyplot as plt
import numpy as np
import torch
def fitness(x):
# Model fitness as a weighted combination of metrics
w = [0.0, 0.0, 0.1, 0.9] # weights for [P, R, mAP@0.5, mAP@0.5:0.95]
return (x[:, :4] * w).sum(1)
def smooth(y, f=0.05):
# Box filter of fraction f
nf = round(len(y) * f * 2) // 2 + 1 # number of filter elements (must be odd)
p = np.ones(nf // 2) # ones padding
yp = np.concatenate((p * y[0], y, p * y[-1]), 0) # y padded
return np.convolve(yp, np.ones(nf) / nf, mode='valid') # y-smoothed
def ap_per_class(tp, conf, pred_cls, target_cls, plot=False, save_dir='.', names=(), eps=1e-16):
""" Compute the average precision, given the recall and precision curves.
Source: https://github.com/rafaelpadilla/Object-Detection-Metrics.
# Arguments
tp: True positives (nparray, nx1 or nx10).
conf: Objectness value from 0-1 (nparray).
pred_cls: Predicted object classes (nparray).
target_cls: True object classes (nparray).
plot: Plot precision-recall curve at mAP@0.5
save_dir: Plot save directory
# Returns
The average precision as computed in py-faster-rcnn.
"""
# Sort by objectness
i = np.argsort(-conf)
tp, conf, pred_cls = tp[i], conf[i], pred_cls[i]
# Find unique classes
unique_classes, nt = np.unique(target_cls, return_counts=True)
nc = unique_classes.shape[0] # number of classes, number of detections
# Create Precision-Recall curve and compute AP for each class
px, py = np.linspace(0, 1, 1000), [] # for plotting
ap, p, r = np.zeros((nc, tp.shape[1])), np.zeros((nc, 1000)), np.zeros((nc, 1000))
for ci, c in enumerate(unique_classes):
i = pred_cls == c
n_l = nt[ci] # number of labels
n_p = i.sum() # number of predictions
if n_p == 0 or n_l == 0:
continue
# Accumulate FPs and TPs
fpc = (1 - tp[i]).cumsum(0)
tpc = tp[i].cumsum(0)
# Recall
recall = tpc / (n_l + eps) # recall curve
r[ci] = np.interp(-px, -conf[i], recall[:, 0], left=0) # negative x, xp because xp decreases
# Precision
precision = tpc / (tpc + fpc) # precision curve
p[ci] = np.interp(-px, -conf[i], precision[:, 0], left=1) # p at pr_score
# AP from recall-precision curve
for j in range(tp.shape[1]):
ap[ci, j], mpre, mrec = compute_ap(recall[:, j], precision[:, j])
if plot and j == 0:
py.append(np.interp(px, mrec, mpre)) # precision at mAP@0.5
# Compute F1 (harmonic mean of precision and recall)
f1 = 2 * p * r / (p + r + eps)
names = [v for k, v in names.items() if k in unique_classes] # list: only classes that have data
names = dict(enumerate(names)) # to dict
if plot:
plot_pr_curve(px, py, ap, Path(save_dir) / 'PR_curve.png', names)
plot_mc_curve(px, f1, Path(save_dir) / 'F1_curve.png', names, ylabel='F1')
plot_mc_curve(px, p, Path(save_dir) / 'P_curve.png', names, ylabel='Precision')
plot_mc_curve(px, r, Path(save_dir) / 'R_curve.png', names, ylabel='Recall')
i = smooth(f1.mean(0), 0.1).argmax() # max F1 index
p, r, f1 = p[:, i], r[:, i], f1[:, i]
tp = (r * nt).round() # true positives
fp = (tp / (p + eps) - tp).round() # false positives
return tp, fp, p, r, f1, ap, unique_classes.astype(int)
def compute_ap(recall, precision):
""" Compute the average precision, given the recall and precision curves
# Arguments
recall: The recall curve (list)
precision: The precision curve (list)
# Returns
Average precision, precision curve, recall curve
"""
# Append sentinel values to beginning and end
mrec = np.concatenate(([0.0], recall, [1.0]))
mpre = np.concatenate(([1.0], precision, [0.0]))
# Compute the precision envelope
mpre = np.flip(np.maximum.accumulate(np.flip(mpre)))
# Integrate area under curve
method = 'interp' # methods: 'continuous', 'interp'
if method == 'interp':
x = np.linspace(0, 1, 101) # 101-point interp (COCO)
ap = np.trapz(np.interp(x, mrec, mpre), x) # integrate
else: # 'continuous'
i = np.where(mrec[1:] != mrec[:-1])[0] # points where x axis (recall) changes
ap = np.sum((mrec[i + 1] - mrec[i]) * mpre[i + 1]) # area under curve
return ap, mpre, mrec
class ConfusionMatrix:
# Updated version of https://github.com/kaanakan/object_detection_confusion_matrix
def __init__(self, nc, conf=0.25, iou_thres=0.45):
self.matrix = np.zeros((nc + 1, nc + 1))
self.nc = nc # number of classes
self.conf = conf
self.iou_thres = iou_thres
def process_batch(self, detections, labels):
"""
Return intersection-over-union (Jaccard index) of boxes.
Both sets of boxes are expected to be in (x1, y1, x2, y2) format.
Arguments:
detections (Array[N, 6]), x1, y1, x2, y2, conf, class
labels (Array[M, 5]), class, x1, y1, x2, y2
Returns:
None, updates confusion matrix accordingly
"""
detections = detections[detections[:, 4] > self.conf]
gt_classes = labels[:, 0].int()
detection_classes = detections[:, 5].int()
iou = box_iou(labels[:, 1:], detections[:, :4])
x = torch.where(iou > self.iou_thres)
if x[0].shape[0]:
matches = torch.cat((torch.stack(x, 1), iou[x[0], x[1]][:, None]), 1).cpu().numpy()
if x[0].shape[0] > 1:
matches = matches[matches[:, 2].argsort()[::-1]]
matches = matches[np.unique(matches[:, 1], return_index=True)[1]]
matches = matches[matches[:, 2].argsort()[::-1]]
matches = matches[np.unique(matches[:, 0], return_index=True)[1]]
else:
matches = np.zeros((0, 3))
n = matches.shape[0] > 0
m0, m1, _ = matches.transpose().astype(int)
for i, gc in enumerate(gt_classes):
j = m0 == i
if n and sum(j) == 1:
self.matrix[detection_classes[m1[j]], gc] += 1 # correct
else:
self.matrix[self.nc, gc] += 1 # background FP
if n:
for i, dc in enumerate(detection_classes):
if not any(m1 == i):
self.matrix[dc, self.nc] += 1 # background FN
def matrix(self):
return self.matrix
def tp_fp(self):
tp = self.matrix.diagonal() # true positives
fp = self.matrix.sum(1) - tp # false positives
# fn = self.matrix.sum(0) - tp # false negatives (missed detections)
return tp[:-1], fp[:-1] # remove background class
def plot(self, normalize=True, save_dir='', names=()):
try:
import seaborn as sn
array = self.matrix / ((self.matrix.sum(0).reshape(1, -1) + 1E-9) if normalize else 1) # normalize columns
array[array < 0.005] = np.nan # don't annotate (would appear as 0.00)
fig = plt.figure(figsize=(12, 9), tight_layout=True)
nc, nn = self.nc, len(names) # number of classes, names
sn.set(font_scale=1.0 if nc < 50 else 0.8) # for label size
labels = (0 < nn < 99) and (nn == nc) # apply names to ticklabels
with warnings.catch_warnings():
warnings.simplefilter('ignore') # suppress empty matrix RuntimeWarning: All-NaN slice encountered
sn.heatmap(array,
annot=nc < 30,
annot_kws={
"size": 8},
cmap='Blues',
fmt='.2f',
square=True,
vmin=0.0,
xticklabels=names + ['background FP'] if labels else "auto",
yticklabels=names + ['background FN'] if labels else "auto").set_facecolor((1, 1, 1))
fig.axes[0].set_xlabel('True')
fig.axes[0].set_ylabel('Predicted')
fig.savefig(Path(save_dir) / 'confusion_matrix.png', dpi=250)
plt.close()
except Exception as e:
print(f'WARNING: ConfusionMatrix plot failure: {e}')
def print(self):
for i in range(self.nc + 1):
print(' '.join(map(str, self.matrix[i])))
def bbox_iou(box1, box2, xywh=True, GIoU=False, DIoU=False, CIoU=False, eps=1e-7):
# Returns Intersection over Union (IoU) of box1(1,4) to box2(n,4)
# Get the coordinates of bounding boxes
if xywh: # transform from xywh to xyxy
(x1, y1, w1, h1), (x2, y2, w2, h2) = box1.chunk(4, 1), box2.chunk(4, 1)
w1_, h1_, w2_, h2_ = w1 / 2, h1 / 2, w2 / 2, h2 / 2
b1_x1, b1_x2, b1_y1, b1_y2 = x1 - w1_, x1 + w1_, y1 - h1_, y1 + h1_
b2_x1, b2_x2, b2_y1, b2_y2 = x2 - w2_, x2 + w2_, y2 - h2_, y2 + h2_
else: # x1, y1, x2, y2 = box1
b1_x1, b1_y1, b1_x2, b1_y2 = box1.chunk(4, 1)
b2_x1, b2_y1, b2_x2, b2_y2 = box2.chunk(4, 1)
w1, h1 = b1_x2 - b1_x1, b1_y2 - b1_y1 + eps
w2, h2 = b2_x2 - b2_x1, b2_y2 - b2_y1 + eps
# Intersection area
inter = (torch.min(b1_x2, b2_x2) - torch.max(b1_x1, b2_x1)).clamp(0) * \
(torch.min(b1_y2, b2_y2) - torch.max(b1_y1, b2_y1)).clamp(0)
# Union Area
union = w1 * h1 + w2 * h2 - inter + eps
# IoU
iou = inter / union
if CIoU or DIoU or GIoU:
cw = torch.max(b1_x2, b2_x2) - torch.min(b1_x1, b2_x1) # convex (smallest enclosing box) width
ch = torch.max(b1_y2, b2_y2) - torch.min(b1_y1, b2_y1) # convex height
if CIoU or DIoU: # Distance or Complete IoU https://arxiv.org/abs/1911.08287v1
c2 = cw ** 2 + ch ** 2 + eps # convex diagonal squared
rho2 = ((b2_x1 + b2_x2 - b1_x1 - b1_x2) ** 2 + (b2_y1 + b2_y2 - b1_y1 - b1_y2) ** 2) / 4 # center dist ** 2
if CIoU: # https://github.com/Zzh-tju/DIoU-SSD-pytorch/blob/master/utils/box/box_utils.py#L47
v = (4 / math.pi ** 2) * torch.pow(torch.atan(w2 / h2) - torch.atan(w1 / h1), 2)
with torch.no_grad():
alpha = v / (v - iou + (1 + eps))
return iou - (rho2 / c2 + v * alpha) # CIoU
return iou - rho2 / c2 # DIoU
c_area = cw * ch + eps # convex area
return iou - (c_area - union) / c_area # GIoU https://arxiv.org/pdf/1902.09630.pdf
return iou # IoU
def box_area(box):
# box = xyxy(4,n)
return (box[2] - box[0]) * (box[3] - box[1])
def box_iou(box1, box2):
# https://github.com/pytorch/vision/blob/master/torchvision/ops/boxes.py
"""
Return intersection-over-union (Jaccard index) of boxes.
Both sets of boxes are expected to be in (x1, y1, x2, y2) format.
Arguments:
box1 (Tensor[N, 4])
box2 (Tensor[M, 4])
Returns:
iou (Tensor[N, M]): the NxM matrix containing the pairwise
IoU values for every element in boxes1 and boxes2
"""
# inter(N,M) = (rb(N,M,2) - lt(N,M,2)).clamp(0).prod(2)
(a1, a2), (b1, b2) = box1[:, None].chunk(2, 2), box2.chunk(2, 1)
inter = (torch.min(a2, b2) - torch.max(a1, b1)).clamp(0).prod(2)
# IoU = inter / (area1 + area2 - inter)
return inter / (box_area(box1.T)[:, None] + box_area(box2.T) - inter)
def bbox_ioa(box1, box2, eps=1E-7):
""" Returns the intersection over box2 area given box1, box2. Boxes are x1y1x2y2
box1: np.array of shape(4)
box2: np.array of shape(nx4)
returns: np.array of shape(n)
"""
# Get the coordinates of bounding boxes
b1_x1, b1_y1, b1_x2, b1_y2 = box1
b2_x1, b2_y1, b2_x2, b2_y2 = box2.T
# Intersection area
inter_area = (np.minimum(b1_x2, b2_x2) - np.maximum(b1_x1, b2_x1)).clip(0) * \
(np.minimum(b1_y2, b2_y2) - np.maximum(b1_y1, b2_y1)).clip(0)
# box2 area
box2_area = (b2_x2 - b2_x1) * (b2_y2 - b2_y1) + eps
# Intersection over box2 area
return inter_area / box2_area
def wh_iou(wh1, wh2):
# Returns the nxm IoU matrix. wh1 is nx2, wh2 is mx2
wh1 = wh1[:, None] # [N,1,2]
wh2 = wh2[None] # [1,M,2]
inter = torch.min(wh1, wh2).prod(2) # [N,M]
return inter / (wh1.prod(2) + wh2.prod(2) - inter) # iou = inter / (area1 + area2 - inter)
# Plots ----------------------------------------------------------------------------------------------------------------
def plot_pr_curve(px, py, ap, save_dir=Path('pr_curve.png'), names=()):
# Precision-recall curve
fig, ax = plt.subplots(1, 1, figsize=(9, 6), tight_layout=True)
py = np.stack(py, axis=1)
if 0 < len(names) < 21: # display per-class legend if < 21 classes
for i, y in enumerate(py.T):
ax.plot(px, y, linewidth=1, label=f'{names[i]} {ap[i, 0]:.3f}') # plot(recall, precision)
else:
ax.plot(px, py, linewidth=1, color='grey') # plot(recall, precision)
ax.plot(px, py.mean(1), linewidth=3, color='blue', label='all classes %.3f mAP@0.5' % ap[:, 0].mean())
ax.set_xlabel('Recall')
ax.set_ylabel('Precision')
ax.set_xlim(0, 1)
ax.set_ylim(0, 1)
plt.legend(bbox_to_anchor=(1.04, 1), loc="upper left")
fig.savefig(save_dir, dpi=250)
plt.close()
def plot_mc_curve(px, py, save_dir=Path('mc_curve.png'), names=(), xlabel='Confidence', ylabel='Metric'):
# Metric-confidence curve
fig, ax = plt.subplots(1, 1, figsize=(9, 6), tight_layout=True)
if 0 < len(names) < 21: # display per-class legend if < 21 classes
for i, y in enumerate(py):
ax.plot(px, y, linewidth=1, label=f'{names[i]}') # plot(confidence, metric)
else:
ax.plot(px, py.T, linewidth=1, color='grey') # plot(confidence, metric)
y = smooth(py.mean(0), 0.05)
ax.plot(px, y, linewidth=3, color='blue', label=f'all classes {y.max():.2f} at {px[y.argmax()]:.3f}')
ax.set_xlabel(xlabel)
ax.set_ylabel(ylabel)
ax.set_xlim(0, 1)
ax.set_ylim(0, 1)
plt.legend(bbox_to_anchor=(1.04, 1), loc="upper left")
fig.savefig(save_dir, dpi=250)
plt.close()
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
Plotting utils
"""
import math
import os
from copy import copy
from pathlib import Path
from urllib.error import URLError
import cv2
import matplotlib
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sn
import torch
from PIL import Image, ImageDraw, ImageFont
from utils.general import (CONFIG_DIR, FONT, LOGGER, Timeout, check_font, check_requirements, clip_coords,
increment_path, is_ascii, threaded, try_except, xywh2xyxy, xyxy2xywh)
from utils.metrics import fitness
# Settings
RANK = int(os.getenv('RANK', -1))
matplotlib.rc('font', **{'size': 11})
matplotlib.use('Agg') # for writing to files only
class Colors:
# Ultralytics color palette https://ultralytics.com/
def __init__(self):
# hex = matplotlib.colors.TABLEAU_COLORS.values()
hexs = ('FF3838', 'FF9D97', 'FF701F', 'FFB21D', 'CFD231', '48F90A', '92CC17', '3DDB86', '1A9334', '00D4BB',
'2C99A8', '00C2FF', '344593', '6473FF', '0018EC', '8438FF', '520085', 'CB38FF', 'FF95C8', 'FF37C7')
self.palette = [self.hex2rgb(f'#{c}') for c in hexs]
self.n = len(self.palette)
def __call__(self, i, bgr=False):
c = self.palette[int(i) % self.n]
return (c[2], c[1], c[0]) if bgr else c
@staticmethod
def hex2rgb(h): # rgb order (PIL)
return tuple(int(h[1 + i:1 + i + 2], 16) for i in (0, 2, 4))
colors = Colors() # create instance for 'from utils.plots import colors'
def check_pil_font(font=FONT, size=10):
# Return a PIL TrueType Font, downloading to CONFIG_DIR if necessary
font = Path(font)
font = font if font.exists() else (CONFIG_DIR / font.name)
try:
return ImageFont.truetype(str(font) if font.exists() else font.name, size)
except Exception: # download if missing
try:
check_font(font)
return ImageFont.truetype(str(font), size)
except TypeError:
check_requirements('Pillow>=8.4.0') # known issue https://github.com/ultralytics/yolov5/issues/5374
except URLError: # not online
return ImageFont.load_default()
class Annotator:
# YOLOv5 Annotator for train/val mosaics and jpgs and detect/hub inference annotations
def __init__(self, im, line_width=None, font_size=None, font='Arial.ttf', pil=False, example='abc'):
assert im.data.contiguous, 'Image not contiguous. Apply np.ascontiguousarray(im) to Annotator() input images.'
non_ascii = not is_ascii(example) # non-latin labels, i.e. asian, arabic, cyrillic
self.pil = pil or non_ascii
if self.pil: # use PIL
self.im = im if isinstance(im, Image.Image) else Image.fromarray(im)
self.draw = ImageDraw.Draw(self.im)
self.font = check_pil_font(font='Arial.Unicode.ttf' if non_ascii else font,
size=font_size or max(round(sum(self.im.size) / 2 * 0.035), 12))
else: # use cv2
self.im = im
self.lw = line_width or max(round(sum(im.shape) / 2 * 0.003), 2) # line width
def box_label(self, box, label='', color=(128, 128, 128), txt_color=(255, 255, 255)):
# Add one xyxy box to image with label
if self.pil or not is_ascii(label):
self.draw.rectangle(box, width=self.lw, outline=color) # box
if label:
w, h = self.font.getsize(label) # text width, height
outside = box[1] - h >= 0 # label fits outside box
self.draw.rectangle(
(box[0], box[1] - h if outside else box[1], box[0] + w + 1,
box[1] + 1 if outside else box[1] + h + 1),
fill=color,
)
# self.draw.text((box[0], box[1]), label, fill=txt_color, font=self.font, anchor='ls') # for PIL>8.0
self.draw.text((box[0], box[1] - h if outside else box[1]), label, fill=txt_color, font=self.font)
else: # cv2
p1, p2 = (int(box[0]), int(box[1])), (int(box[2]), int(box[3]))
cv2.rectangle(self.im, p1, p2, color, thickness=self.lw, lineType=cv2.LINE_AA)
if label:
tf = max(self.lw - 1, 1) # font thickness
w, h = cv2.getTextSize(label, 0, fontScale=self.lw / 3, thickness=tf)[0] # text width, height
outside = p1[1] - h >= 3
p2 = p1[0] + w, p1[1] - h - 3 if outside else p1[1] + h + 3
cv2.rectangle(self.im, p1, p2, color, -1, cv2.LINE_AA) # filled
cv2.putText(self.im,
label, (p1[0], p1[1] - 2 if outside else p1[1] + h + 2),
0,
self.lw / 3,
txt_color,
thickness=tf,
lineType=cv2.LINE_AA)
def rectangle(self, xy, fill=None, outline=None, width=1):
# Add rectangle to image (PIL-only)
self.draw.rectangle(xy, fill, outline, width)
def text(self, xy, text, txt_color=(255, 255, 255)):
# Add text to image (PIL-only)
w, h = self.font.getsize(text) # text width, height
self.draw.text((xy[0], xy[1] - h + 1), text, fill=txt_color, font=self.font)
def result(self):
# Return annotated image as array
return np.asarray(self.im)
def feature_visualization(x, module_type, stage, n=32, save_dir=Path('runs/detect/exp')):
"""
x: Features to be visualized
module_type: Module type
stage: Module stage within model
n: Maximum number of feature maps to plot
save_dir: Directory to save results
"""
if 'Detect' not in module_type:
batch, channels, height, width = x.shape # batch, channels, height, width
if height > 1 and width > 1:
f = save_dir / f"stage{stage}_{module_type.split('.')[-1]}_features.png" # filename
blocks = torch.chunk(x[0].cpu(), channels, dim=0) # select batch index 0, block by channels
n = min(n, channels) # number of plots
fig, ax = plt.subplots(math.ceil(n / 8), 8, tight_layout=True) # 8 rows x n/8 cols
ax = ax.ravel()
plt.subplots_adjust(wspace=0.05, hspace=0.05)
for i in range(n):
ax[i].imshow(blocks[i].squeeze()) # cmap='gray'
ax[i].axis('off')
LOGGER.info(f'Saving {f}... ({n}/{channels})')
plt.savefig(f, dpi=300, bbox_inches='tight')
plt.close()
np.save(str(f.with_suffix('.npy')), x[0].cpu().numpy()) # npy save
def hist2d(x, y, n=100):
# 2d histogram used in labels.png and evolve.png
xedges, yedges = np.linspace(x.min(), x.max(), n), np.linspace(y.min(), y.max(), n)
hist, xedges, yedges = np.histogram2d(x, y, (xedges, yedges))
xidx = np.clip(np.digitize(x, xedges) - 1, 0, hist.shape[0] - 1)
yidx = np.clip(np.digitize(y, yedges) - 1, 0, hist.shape[1] - 1)
return np.log(hist[xidx, yidx])
def butter_lowpass_filtfilt(data, cutoff=1500, fs=50000, order=5):
from scipy.signal import butter, filtfilt
# https://stackoverflow.com/questions/28536191/how-to-filter-smooth-with-scipy-numpy
def butter_lowpass(cutoff, fs, order):
nyq = 0.5 * fs
normal_cutoff = cutoff / nyq
return butter(order, normal_cutoff, btype='low', analog=False)
b, a = butter_lowpass(cutoff, fs, order=order)
return filtfilt(b, a, data) # forward-backward filter
def output_to_target(output):
# Convert model output to target format [batch_id, class_id, x, y, w, h, conf]
targets = []
for i, o in enumerate(output):
for *box, conf, cls in o.cpu().numpy():
targets.append([i, cls, *list(*xyxy2xywh(np.array(box)[None])), conf])
return np.array(targets)
@threaded
def plot_images(images, targets, paths=None, fname='images.jpg', names=None, max_size=1920, max_subplots=16):
# Plot image grid with labels
if isinstance(images, torch.Tensor):
images = images.cpu().float().numpy()
if isinstance(targets, torch.Tensor):
targets = targets.cpu().numpy()
if np.max(images[0]) <= 1:
images *= 255 # de-normalise (optional)
bs, _, h, w = images.shape # batch size, _, height, width
bs = min(bs, max_subplots) # limit plot images
ns = np.ceil(bs ** 0.5) # number of subplots (square)
# Build Image
mosaic = np.full((int(ns * h), int(ns * w), 3), 255, dtype=np.uint8) # init
for i, im in enumerate(images):
if i == max_subplots: # if last batch has fewer images than we expect
break
x, y = int(w * (i // ns)), int(h * (i % ns)) # block origin
im = im.transpose(1, 2, 0)
mosaic[y:y + h, x:x + w, :] = im
# Resize (optional)
scale = max_size / ns / max(h, w)
if scale < 1:
h = math.ceil(scale * h)
w = math.ceil(scale * w)
mosaic = cv2.resize(mosaic, tuple(int(x * ns) for x in (w, h)))
# Annotate
fs = int((h + w) * ns * 0.01) # font size
annotator = Annotator(mosaic, line_width=round(fs / 10), font_size=fs, pil=True, example=names)
for i in range(i + 1):
x, y = int(w * (i // ns)), int(h * (i % ns)) # block origin
annotator.rectangle([x, y, x + w, y + h], None, (255, 255, 255), width=2) # borders
if paths:
annotator.text((x + 5, y + 5 + h), text=Path(paths[i]).name[:40], txt_color=(220, 220, 220)) # filenames
if len(targets) > 0:
ti = targets[targets[:, 0] == i] # image targets
boxes = xywh2xyxy(ti[:, 2:6]).T
classes = ti[:, 1].astype('int')
labels = ti.shape[1] == 6 # labels if no conf column
conf = None if labels else ti[:, 6] # check for confidence presence (label vs pred)
if boxes.shape[1]:
if boxes.max() <= 1.01: # if normalized with tolerance 0.01
boxes[[0, 2]] *= w # scale to pixels
boxes[[1, 3]] *= h
elif scale < 1: # absolute coords need scale if image scales
boxes *= scale
boxes[[0, 2]] += x
boxes[[1, 3]] += y
for j, box in enumerate(boxes.T.tolist()):
cls = classes[j]
color = colors(cls)
cls = names[cls] if names else cls
if labels or conf[j] > 0.25: # 0.25 conf thresh
label = f'{cls}' if labels else f'{cls} {conf[j]:.1f}'
annotator.box_label(box, label, color=color)
annotator.im.save(fname) # save
def plot_lr_scheduler(optimizer, scheduler, epochs=300, save_dir=''):
# Plot LR simulating training for full epochs
optimizer, scheduler = copy(optimizer), copy(scheduler) # do not modify originals
y = []
for _ in range(epochs):
scheduler.step()
y.append(optimizer.param_groups[0]['lr'])
plt.plot(y, '.-', label='LR')
plt.xlabel('epoch')
plt.ylabel('LR')
plt.grid()
plt.xlim(0, epochs)
plt.ylim(0)
plt.savefig(Path(save_dir) / 'LR.png', dpi=200)
plt.close()
def plot_val_txt(): # from utils.plots import *; plot_val()
# Plot val.txt histograms
x = np.loadtxt('val.txt', dtype=np.float32)
box = xyxy2xywh(x[:, :4])
cx, cy = box[:, 0], box[:, 1]
fig, ax = plt.subplots(1, 1, figsize=(6, 6), tight_layout=True)
ax.hist2d(cx, cy, bins=600, cmax=10, cmin=0)
ax.set_aspect('equal')
plt.savefig('hist2d.png', dpi=300)
fig, ax = plt.subplots(1, 2, figsize=(12, 6), tight_layout=True)
ax[0].hist(cx, bins=600)
ax[1].hist(cy, bins=600)
plt.savefig('hist1d.png', dpi=200)
def plot_targets_txt(): # from utils.plots import *; plot_targets_txt()
# Plot targets.txt histograms
x = np.loadtxt('targets.txt', dtype=np.float32).T
s = ['x targets', 'y targets', 'width targets', 'height targets']
fig, ax = plt.subplots(2, 2, figsize=(8, 8), tight_layout=True)
ax = ax.ravel()
for i in range(4):
ax[i].hist(x[i], bins=100, label=f'{x[i].mean():.3g} +/- {x[i].std():.3g}')
ax[i].legend()
ax[i].set_title(s[i])
plt.savefig('targets.jpg', dpi=200)
def plot_val_study(file='', dir='', x=None): # from utils.plots import *; plot_val_study()
# Plot file=study.txt generated by val.py (or plot all study*.txt in dir)
save_dir = Path(file).parent if file else Path(dir)
plot2 = False # plot additional results
if plot2:
ax = plt.subplots(2, 4, figsize=(10, 6), tight_layout=True)[1].ravel()
fig2, ax2 = plt.subplots(1, 1, figsize=(8, 4), tight_layout=True)
# for f in [save_dir / f'study_coco_{x}.txt' for x in ['yolov5n6', 'yolov5s6', 'yolov5m6', 'yolov5l6', 'yolov5x6']]:
for f in sorted(save_dir.glob('study*.txt')):
y = np.loadtxt(f, dtype=np.float32, usecols=[0, 1, 2, 3, 7, 8, 9], ndmin=2).T
x = np.arange(y.shape[1]) if x is None else np.array(x)
if plot2:
s = ['P', 'R', 'mAP@.5', 'mAP@.5:.95', 't_preprocess (ms/img)', 't_inference (ms/img)', 't_NMS (ms/img)']
for i in range(7):
ax[i].plot(x, y[i], '.-', linewidth=2, markersize=8)
ax[i].set_title(s[i])
j = y[3].argmax() + 1
ax2.plot(y[5, 1:j],
y[3, 1:j] * 1E2,
'.-',
linewidth=2,
markersize=8,
label=f.stem.replace('study_coco_', '').replace('yolo', 'YOLO'))
ax2.plot(1E3 / np.array([209, 140, 97, 58, 35, 18]), [34.6, 40.5, 43.0, 47.5, 49.7, 51.5],
'k.-',
linewidth=2,
markersize=8,
alpha=.25,
label='EfficientDet')
ax2.grid(alpha=0.2)
ax2.set_yticks(np.arange(20, 60, 5))
ax2.set_xlim(0, 57)
ax2.set_ylim(25, 55)
ax2.set_xlabel('GPU Speed (ms/img)')
ax2.set_ylabel('COCO AP val')
ax2.legend(loc='lower right')
f = save_dir / 'study.png'
print(f'Saving {f}...')
plt.savefig(f, dpi=300)
@try_except # known issue https://github.com/ultralytics/yolov5/issues/5395
@Timeout(30) # known issue https://github.com/ultralytics/yolov5/issues/5611
def plot_labels(labels, names=(), save_dir=Path('')):
# plot dataset labels
LOGGER.info(f"Plotting labels to {save_dir / 'labels.jpg'}... ")
c, b = labels[:, 0], labels[:, 1:].transpose() # classes, boxes
nc = int(c.max() + 1) # number of classes
x = pd.DataFrame(b.transpose(), columns=['x', 'y', 'width', 'height'])
# seaborn correlogram
sn.pairplot(x, corner=True, diag_kind='auto', kind='hist', diag_kws=dict(bins=50), plot_kws=dict(pmax=0.9))
plt.savefig(save_dir / 'labels_correlogram.jpg', dpi=200)
plt.close()
# matplotlib labels
matplotlib.use('svg') # faster
ax = plt.subplots(2, 2, figsize=(8, 8), tight_layout=True)[1].ravel()
y = ax[0].hist(c, bins=np.linspace(0, nc, nc + 1) - 0.5, rwidth=0.8)
try: # color histogram bars by class
[y[2].patches[i].set_color([x / 255 for x in colors(i)]) for i in range(nc)] # known issue #3195
except Exception:
pass
ax[0].set_ylabel('instances')
if 0 < len(names) < 30:
ax[0].set_xticks(range(len(names)))
ax[0].set_xticklabels(names, rotation=90, fontsize=10)
else:
ax[0].set_xlabel('classes')
sn.histplot(x, x='x', y='y', ax=ax[2], bins=50, pmax=0.9)
sn.histplot(x, x='width', y='height', ax=ax[3], bins=50, pmax=0.9)
# rectangles
labels[:, 1:3] = 0.5 # center
labels[:, 1:] = xywh2xyxy(labels[:, 1:]) * 2000
img = Image.fromarray(np.ones((2000, 2000, 3), dtype=np.uint8) * 255)
for cls, *box in labels[:1000]:
ImageDraw.Draw(img).rectangle(box, width=1, outline=colors(cls)) # plot
ax[1].imshow(img)
ax[1].axis('off')
for a in [0, 1, 2, 3]:
for s in ['top', 'right', 'left', 'bottom']:
ax[a].spines[s].set_visible(False)
plt.savefig(save_dir / 'labels.jpg', dpi=200)
matplotlib.use('Agg')
plt.close()
def plot_evolve(evolve_csv='path/to/evolve.csv'): # from utils.plots import *; plot_evolve()
# Plot evolve.csv hyp evolution results
evolve_csv = Path(evolve_csv)
data = pd.read_csv(evolve_csv)
keys = [x.strip() for x in data.columns]
x = data.values
f = fitness(x)
j = np.argmax(f) # max fitness index
plt.figure(figsize=(10, 12), tight_layout=True)
matplotlib.rc('font', **{'size': 8})
print(f'Best results from row {j} of {evolve_csv}:')
for i, k in enumerate(keys[7:]):
v = x[:, 7 + i]
mu = v[j] # best single result
plt.subplot(6, 5, i + 1)
plt.scatter(v, f, c=hist2d(v, f, 20), cmap='viridis', alpha=.8, edgecolors='none')
plt.plot(mu, f.max(), 'k+', markersize=15)
plt.title(f'{k} = {mu:.3g}', fontdict={'size': 9}) # limit to 40 characters
if i % 5 != 0:
plt.yticks([])
print(f'{k:>15}: {mu:.3g}')
f = evolve_csv.with_suffix('.png') # filename
plt.savefig(f, dpi=200)
plt.close()
print(f'Saved {f}')
def plot_results(file='path/to/results.csv', dir=''):
# Plot training results.csv. Usage: from utils.plots import *; plot_results('path/to/results.csv')
save_dir = Path(file).parent if file else Path(dir)
fig, ax = plt.subplots(2, 5, figsize=(12, 6), tight_layout=True)
ax = ax.ravel()
files = list(save_dir.glob('results*.csv'))
assert len(files), f'No results.csv files found in {save_dir.resolve()}, nothing to plot.'
for f in files:
try:
data = pd.read_csv(f)
s = [x.strip() for x in data.columns]
x = data.values[:, 0]
for i, j in enumerate([1, 2, 3, 4, 5, 8, 9, 10, 6, 7]):
y = data.values[:, j].astype('float')
# y[y == 0] = np.nan # don't show zero values
ax[i].plot(x, y, marker='.', label=f.stem, linewidth=2, markersize=8)
ax[i].set_title(s[j], fontsize=12)
# if j in [8, 9, 10]: # share train and val loss y axes
# ax[i].get_shared_y_axes().join(ax[i], ax[i - 5])
except Exception as e:
LOGGER.info(f'Warning: Plotting error for {f}: {e}')
ax[1].legend()
fig.savefig(save_dir / 'results.png', dpi=200)
plt.close()
def profile_idetection(start=0, stop=0, labels=(), save_dir=''):
# Plot iDetection '*.txt' per-image logs. from utils.plots import *; profile_idetection()
ax = plt.subplots(2, 4, figsize=(12, 6), tight_layout=True)[1].ravel()
s = ['Images', 'Free Storage (GB)', 'RAM Usage (GB)', 'Battery', 'dt_raw (ms)', 'dt_smooth (ms)', 'real-world FPS']
files = list(Path(save_dir).glob('frames*.txt'))
for fi, f in enumerate(files):
try:
results = np.loadtxt(f, ndmin=2).T[:, 90:-30] # clip first and last rows
n = results.shape[1] # number of rows
x = np.arange(start, min(stop, n) if stop else n)
results = results[:, x]
t = (results[0] - results[0].min()) # set t0=0s
results[0] = x
for i, a in enumerate(ax):
if i < len(results):
label = labels[fi] if len(labels) else f.stem.replace('frames_', '')
a.plot(t, results[i], marker='.', label=label, linewidth=1, markersize=5)
a.set_title(s[i])
a.set_xlabel('time (s)')
# if fi == len(files) - 1:
# a.set_ylim(bottom=0)
for side in ['top', 'right']:
a.spines[side].set_visible(False)
else:
a.remove()
except Exception as e:
print(f'Warning: Plotting error for {f}; {e}')
ax[1].legend()
plt.savefig(Path(save_dir) / 'idetection_profile.png', dpi=200)
def save_one_box(xyxy, im, file=Path('im.jpg'), gain=1.02, pad=10, square=False, BGR=False, save=True):
# Save image crop as {file} with crop size multiple {gain} and {pad} pixels. Save and/or return crop
xyxy = torch.tensor(xyxy).view(-1, 4)
b = xyxy2xywh(xyxy) # boxes
if square:
b[:, 2:] = b[:, 2:].max(1)[0].unsqueeze(1) # attempt rectangle to square
b[:, 2:] = b[:, 2:] * gain + pad # box wh * gain + pad
xyxy = xywh2xyxy(b).long()
clip_coords(xyxy, im.shape)
crop = im[int(xyxy[0, 1]):int(xyxy[0, 3]), int(xyxy[0, 0]):int(xyxy[0, 2]), ::(1 if BGR else -1)]
if save:
file.parent.mkdir(parents=True, exist_ok=True) # make directory
f = str(increment_path(file).with_suffix('.jpg'))
# cv2.imwrite(f, crop) # https://github.com/ultralytics/yolov5/issues/7007 chroma subsampling issue
Image.fromarray(cv2.cvtColor(crop, cv2.COLOR_BGR2RGB)).save(f, quality=95, subsampling=0)
return crop
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# YOLOv5 🚀 by Ultralytics, GPL-3.0 license
"""
PyTorch utils
"""
import math
import os
import platform
import subprocess
import time
import warnings
from contextlib import contextmanager
from copy import deepcopy
from pathlib import Path
import torch
import torch.distributed as dist
import torch.nn as nn
import torch.nn.functional as F
from utils.general import LOGGER, file_date, git_describe
try:
import thop # for FLOPs computation
except ImportError:
thop = None
# Suppress PyTorch warnings
warnings.filterwarnings('ignore', message='User provided device_type of \'cuda\', but CUDA is not available. Disabling')
@contextmanager
def torch_distributed_zero_first(local_rank: int):
# Decorator to make all processes in distributed training wait for each local_master to do something
if local_rank not in [-1, 0]:
dist.barrier(device_ids=[local_rank])
yield
if local_rank == 0:
dist.barrier(device_ids=[0])
def device_count():
# Returns number of CUDA devices available. Safe version of torch.cuda.device_count(). Supports Linux and Windows
assert platform.system() in ('Linux', 'Windows'), 'device_count() only supported on Linux or Windows'
try:
cmd = 'nvidia-smi -L | wc -l' if platform.system() == 'Linux' else 'nvidia-smi -L | find /c /v ""' # Windows
return int(subprocess.run(cmd, shell=True, capture_output=True, check=True).stdout.decode().split()[-1])
except Exception:
return 0
def select_device(device='', batch_size=0, newline=True):
# device = None or 'cpu' or 0 or '0' or '0,1,2,3'
s = f'YOLOv5 🚀 {git_describe() or file_date()} Python-{platform.python_version()} torch-{torch.__version__} '
device = str(device).strip().lower().replace('cuda:', '').replace('none', '') # to string, 'cuda:0' to '0'
cpu = device == 'cpu'
mps = device == 'mps' # Apple Metal Performance Shaders (MPS)
if cpu or mps:
os.environ['CUDA_VISIBLE_DEVICES'] = '-1' # force torch.cuda.is_available() = False
elif device: # non-cpu device requested
os.environ['CUDA_VISIBLE_DEVICES'] = device # set environment variable - must be before assert is_available()
assert torch.cuda.is_available() and torch.cuda.device_count() >= len(device.replace(',', '')), \
f"Invalid CUDA '--device {device}' requested, use '--device cpu' or pass valid CUDA device(s)"
cuda = not cpu and torch.cuda.is_available()
if cuda:
devices = device.split(',') if device else '0' # range(torch.cuda.device_count()) # i.e. 0,1,6,7
n = len(devices) # device count
if n > 1 and batch_size > 0: # check batch_size is divisible by device_count
assert batch_size % n == 0, f'batch-size {batch_size} not multiple of GPU count {n}'
space = ' ' * (len(s) + 1)
for i, d in enumerate(devices):
p = torch.cuda.get_device_properties(i)
s += f"{'' if i == 0 else space}CUDA:{d} ({p.name}, {p.total_memory / (1 << 20):.0f}MiB)\n" # bytes to MB
elif mps:
s += 'MPS\n'
else:
s += 'CPU\n'
if not newline:
s = s.rstrip()
LOGGER.info(s.encode().decode('ascii', 'ignore') if platform.system() == 'Windows' else s) # emoji-safe
return torch.device('cuda:0' if cuda else 'mps' if mps else 'cpu')
def time_sync():
# PyTorch-accurate time
if torch.cuda.is_available():
torch.cuda.synchronize()
return time.time()
def profile(input, ops, n=10, device=None):
# YOLOv5 speed/memory/FLOPs profiler
#
# Usage:
# input = torch.randn(16, 3, 640, 640)
# m1 = lambda x: x * torch.sigmoid(x)
# m2 = nn.SiLU()
# profile(input, [m1, m2], n=100) # profile over 100 iterations
results = []
if not isinstance(device, torch.device):
device = select_device(device)
print(f"{'Params':>12s}{'GFLOPs':>12s}{'GPU_mem (GB)':>14s}{'forward (ms)':>14s}{'backward (ms)':>14s}"
f"{'input':>24s}{'output':>24s}")
for x in input if isinstance(input, list) else [input]:
x = x.to(device)
x.requires_grad = True
for m in ops if isinstance(ops, list) else [ops]:
m = m.to(device) if hasattr(m, 'to') else m # device
m = m.half() if hasattr(m, 'half') and isinstance(x, torch.Tensor) and x.dtype is torch.float16 else m
tf, tb, t = 0, 0, [0, 0, 0] # dt forward, backward
try:
flops = thop.profile(m, inputs=(x,), verbose=False)[0] / 1E9 * 2 # GFLOPs
except Exception:
flops = 0
try:
for _ in range(n):
t[0] = time_sync()
y = m(x)
t[1] = time_sync()
try:
_ = (sum(yi.sum() for yi in y) if isinstance(y, list) else y).sum().backward()
t[2] = time_sync()
except Exception: # no backward method
# print(e) # for debug
t[2] = float('nan')
tf += (t[1] - t[0]) * 1000 / n # ms per op forward
tb += (t[2] - t[1]) * 1000 / n # ms per op backward
mem = torch.cuda.memory_reserved() / 1E9 if torch.cuda.is_available() else 0 # (GB)
s_in, s_out = (tuple(x.shape) if isinstance(x, torch.Tensor) else 'list' for x in (x, y)) # shapes
p = sum(x.numel() for x in m.parameters()) if isinstance(m, nn.Module) else 0 # parameters
print(f'{p:12}{flops:12.4g}{mem:>14.3f}{tf:14.4g}{tb:14.4g}{str(s_in):>24s}{str(s_out):>24s}')
results.append([p, flops, mem, tf, tb, s_in, s_out])
except Exception as e:
print(e)
results.append(None)
torch.cuda.empty_cache()
return results
def is_parallel(model):
# Returns True if model is of type DP or DDP
return type(model) in (nn.parallel.DataParallel, nn.parallel.DistributedDataParallel)
def de_parallel(model):
# De-parallelize a model: returns single-GPU model if model is of type DP or DDP
return model.module if is_parallel(model) else model
def initialize_weights(model):
for m in model.modules():
t = type(m)
if t is nn.Conv2d:
pass # nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
elif t is nn.BatchNorm2d:
m.eps = 1e-3
m.momentum = 0.03
elif t in [nn.Hardswish, nn.LeakyReLU, nn.ReLU, nn.ReLU6, nn.SiLU]:
m.inplace = True
def find_modules(model, mclass=nn.Conv2d):
# Finds layer indices matching module class 'mclass'
return [i for i, m in enumerate(model.module_list) if isinstance(m, mclass)]
def sparsity(model):
# Return global model sparsity
a, b = 0, 0
for p in model.parameters():
a += p.numel()
b += (p == 0).sum()
return b / a
def prune(model, amount=0.3):
# Prune model to requested global sparsity
import torch.nn.utils.prune as prune
print('Pruning model... ', end='')
for name, m in model.named_modules():
if isinstance(m, nn.Conv2d):
prune.l1_unstructured(m, name='weight', amount=amount) # prune
prune.remove(m, 'weight') # make permanent
print(' %.3g global sparsity' % sparsity(model))
def fuse_conv_and_bn(conv, bn):
# Fuse Conv2d() and BatchNorm2d() layers https://tehnokv.com/posts/fusing-batchnorm-and-conv/
fusedconv = nn.Conv2d(conv.in_channels,
conv.out_channels,
kernel_size=conv.kernel_size,
stride=conv.stride,
padding=conv.padding,
groups=conv.groups,
bias=True).requires_grad_(False).to(conv.weight.device)
# Prepare filters
w_conv = conv.weight.clone().view(conv.out_channels, -1)
w_bn = torch.diag(bn.weight.div(torch.sqrt(bn.eps + bn.running_var)))
fusedconv.weight.copy_(torch.mm(w_bn, w_conv).view(fusedconv.weight.shape))
# Prepare spatial bias
b_conv = torch.zeros(conv.weight.size(0), device=conv.weight.device) if conv.bias is None else conv.bias
b_bn = bn.bias - bn.weight.mul(bn.running_mean).div(torch.sqrt(bn.running_var + bn.eps))
fusedconv.bias.copy_(torch.mm(w_bn, b_conv.reshape(-1, 1)).reshape(-1) + b_bn)
return fusedconv
def model_info(model, verbose=False, img_size=640):
# Model information. img_size may be int or list, i.e. img_size=640 or img_size=[640, 320]
n_p = sum(x.numel() for x in model.parameters()) # number parameters
n_g = sum(x.numel() for x in model.parameters() if x.requires_grad) # number gradients
if verbose:
print(f"{'layer':>5} {'name':>40} {'gradient':>9} {'parameters':>12} {'shape':>20} {'mu':>10} {'sigma':>10}")
for i, (name, p) in enumerate(model.named_parameters()):
name = name.replace('module_list.', '')
print('%5g %40s %9s %12g %20s %10.3g %10.3g' %
(i, name, p.requires_grad, p.numel(), list(p.shape), p.mean(), p.std()))
try: # FLOPs
from thop import profile
stride = max(int(model.stride.max()), 32) if hasattr(model, 'stride') else 32
img = torch.zeros((1, model.yaml.get('ch', 3), stride, stride), device=next(model.parameters()).device) # input
flops = profile(deepcopy(model), inputs=(img,), verbose=False)[0] / 1E9 * 2 # stride GFLOPs
img_size = img_size if isinstance(img_size, list) else [img_size, img_size] # expand if int/float
fs = ', %.1f GFLOPs' % (flops * img_size[0] / stride * img_size[1] / stride) # 640x640 GFLOPs
except Exception:
fs = ''
name = Path(model.yaml_file).stem.replace('yolov5', 'YOLOv5') if hasattr(model, 'yaml_file') else 'Model'
LOGGER.info(f"{name} summary: {len(list(model.modules()))} layers, {n_p} parameters, {n_g} gradients{fs}")
def scale_img(img, ratio=1.0, same_shape=False, gs=32): # img(16,3,256,416)
# Scales img(bs,3,y,x) by ratio constrained to gs-multiple
if ratio == 1.0:
return img
h, w = img.shape[2:]
s = (int(h * ratio), int(w * ratio)) # new size
img = F.interpolate(img, size=s, mode='bilinear', align_corners=False) # resize
if not same_shape: # pad/crop img
h, w = (math.ceil(x * ratio / gs) * gs for x in (h, w))
return F.pad(img, [0, w - s[1], 0, h - s[0]], value=0.447) # value = imagenet mean
def copy_attr(a, b, include=(), exclude=()):
# Copy attributes from b to a, options to only include [...] and to exclude [...]
for k, v in b.__dict__.items():
if (len(include) and k not in include) or k.startswith('_') or k in exclude:
continue
else:
setattr(a, k, v)
class EarlyStopping:
# YOLOv5 simple early stopper
def __init__(self, patience=30):
self.best_fitness = 0.0 # i.e. mAP
self.best_epoch = 0
self.patience = patience or float('inf') # epochs to wait after fitness stops improving to stop
self.possible_stop = False # possible stop may occur next epoch
def __call__(self, epoch, fitness):
if fitness >= self.best_fitness: # >= 0 to allow for early zero-fitness stage of training
self.best_epoch = epoch
self.best_fitness = fitness
delta = epoch - self.best_epoch # epochs without improvement
self.possible_stop = delta >= (self.patience - 1) # possible stop may occur next epoch
stop = delta >= self.patience # stop training if patience exceeded
if stop:
LOGGER.info(f'Stopping training early as no improvement observed in last {self.patience} epochs. '
f'Best results observed at epoch {self.best_epoch}, best model saved as best.pt.\n'
f'To update EarlyStopping(patience={self.patience}) pass a new patience value, '
f'i.e. `python train.py --patience 300` or use `--patience 0` to disable EarlyStopping.')
return stop
class ModelEMA:
""" Updated Exponential Moving Average (EMA) from https://github.com/rwightman/pytorch-image-models
Keeps a moving average of everything in the model state_dict (parameters and buffers)
For EMA details see https://www.tensorflow.org/api_docs/python/tf/train/ExponentialMovingAverage
"""
def __init__(self, model, decay=0.9999, tau=2000, updates=0):
# Create EMA
self.ema = deepcopy(de_parallel(model)).eval() # FP32 EMA
# if next(model.parameters()).device.type != 'cpu':
# self.ema.half() # FP16 EMA
self.updates = updates # number of EMA updates
self.decay = lambda x: decay * (1 - math.exp(-x / tau)) # decay exponential ramp (to help early epochs)
for p in self.ema.parameters():
p.requires_grad_(False)
def update(self, model):
# Update EMA parameters
with torch.no_grad():
self.updates += 1
d = self.decay(self.updates)
msd = de_parallel(model).state_dict() # model state_dict
for k, v in self.ema.state_dict().items():
if v.dtype.is_floating_point:
v *= d
v += (1 - d) * msd[k].detach()
def update_attr(self, model, include=(), exclude=('process_group', 'reducer')):
# Update EMA attributes
copy_attr(self.ema, model, include, exclude)